Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Vps28Q9D1C8 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Vps28Q9D1C8 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Vps28Q9D1C8 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Vps28Q9D1C8 Gm6576-201ENSMUST00000169678 883 ntBASIC18.12■□□□□ 0.49
Vps28Q9D1C8 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC18.12■□□□□ 0.49
Vps28Q9D1C8 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC18.12■□□□□ 0.49
Vps28Q9D1C8 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Vps28Q9D1C8 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Vps28Q9D1C8 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC18.12■□□□□ 0.49
Vps28Q9D1C8 CT010444.2-201ENSMUST00000217877 1629 ntBASIC18.12■□□□□ 0.49
Vps28Q9D1C8 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC18.11■□□□□ 0.49
Vps28Q9D1C8 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Vps28Q9D1C8 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Vps28Q9D1C8 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
Vps28Q9D1C8 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC18.11■□□□□ 0.49
Vps28Q9D1C8 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC18.11■□□□□ 0.49
Vps28Q9D1C8 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC18.11■□□□□ 0.49
Vps28Q9D1C8 Gm10252-201ENSMUST00000209541 832 ntBASIC18.11■□□□□ 0.49
Vps28Q9D1C8 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Vps28Q9D1C8 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Vps28Q9D1C8 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Vps28Q9D1C8 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Vps28Q9D1C8 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC18.11■□□□□ 0.49
Vps28Q9D1C8 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Vps28Q9D1C8 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC18.11■□□□□ 0.49
Vps28Q9D1C8 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Vps28Q9D1C8 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC18.11■□□□□ 0.49
Vps28Q9D1C8 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Vps28Q9D1C8 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Vps28Q9D1C8 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Vps28Q9D1C8 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC18.1■□□□□ 0.49
Vps28Q9D1C8 Mir2861-201ENSMUST00000175539 82 ntBASIC18.1■□□□□ 0.49
Vps28Q9D1C8 Gm29241-201ENSMUST00000189260 1096 ntBASIC18.1■□□□□ 0.49
Vps28Q9D1C8 Gm43183-201ENSMUST00000200632 547 ntBASIC18.1■□□□□ 0.49
Vps28Q9D1C8 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Vps28Q9D1C8 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Vps28Q9D1C8 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Vps28Q9D1C8 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Vps28Q9D1C8 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Vps28Q9D1C8 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC18.09■□□□□ 0.49
Vps28Q9D1C8 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Vps28Q9D1C8 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Vps28Q9D1C8 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC18.09■□□□□ 0.49
Vps28Q9D1C8 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Vps28Q9D1C8 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Vps28Q9D1C8 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC18.09■□□□□ 0.49
Vps28Q9D1C8 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC18.09■□□□□ 0.49
Vps28Q9D1C8 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Vps28Q9D1C8 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Vps28Q9D1C8 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Vps28Q9D1C8 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Vps28Q9D1C8 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Vps28Q9D1C8 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Vps28Q9D1C8 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
Vps28Q9D1C8 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Vps28Q9D1C8 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Vps28Q9D1C8 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Vps28Q9D1C8 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Vps28Q9D1C8 AC108858.1-201ENSMUST00000228461 1498 ntBASIC18.08■□□□□ 0.49
Vps28Q9D1C8 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
Vps28Q9D1C8 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Vps28Q9D1C8 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Vps28Q9D1C8 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Vps28Q9D1C8 Mir1199-201ENSMUST00000117015 119 ntBASIC18.08■□□□□ 0.48
Vps28Q9D1C8 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC18.08■□□□□ 0.48
Vps28Q9D1C8 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
Vps28Q9D1C8 Fst-202ENSMUST00000223640 2612 ntBASIC18.08■□□□□ 0.48
Vps28Q9D1C8 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Vps28Q9D1C8 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC18.08■□□□□ 0.48
Vps28Q9D1C8 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC18.07■□□□□ 0.48
Vps28Q9D1C8 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
Vps28Q9D1C8 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Vps28Q9D1C8 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Vps28Q9D1C8 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Vps28Q9D1C8 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Vps28Q9D1C8 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Vps28Q9D1C8 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Vps28Q9D1C8 Gm12382-201ENSMUST00000122005 922 ntBASIC18.07■□□□□ 0.48
Vps28Q9D1C8 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Vps28Q9D1C8 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC18.07■□□□□ 0.48
Vps28Q9D1C8 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
Vps28Q9D1C8 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Vps28Q9D1C8 Gm10654-201ENSMUST00000098653 1633 ntBASIC18.07■□□□□ 0.48
Vps28Q9D1C8 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Vps28Q9D1C8 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Vps28Q9D1C8 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Vps28Q9D1C8 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
Vps28Q9D1C8 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Vps28Q9D1C8 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Vps28Q9D1C8 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Vps28Q9D1C8 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Vps28Q9D1C8 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Vps28Q9D1C8 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Vps28Q9D1C8 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Vps28Q9D1C8 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Vps28Q9D1C8 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Vps28Q9D1C8 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Vps28Q9D1C8 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
Vps28Q9D1C8 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 65.5 ms