Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm6576-201ENSMUST00000169678 883 ntBASIC19.76■□□□□ 0.75
Smc1aQ9CU62 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC19.76■□□□□ 0.75
Smc1aQ9CU62 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Smc1aQ9CU62 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Smc1aQ9CU62 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
Smc1aQ9CU62 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC19.76■□□□□ 0.75
Smc1aQ9CU62 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Smc1aQ9CU62 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Smc1aQ9CU62 Dio3-201ENSMUST00000097228 1449 ntBASIC19.76■□□□□ 0.75
Smc1aQ9CU62 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Smc1aQ9CU62 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC19.75■□□□□ 0.75
Smc1aQ9CU62 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Smc1aQ9CU62 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Smc1aQ9CU62 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Smc1aQ9CU62 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Smc1aQ9CU62 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Smc1aQ9CU62 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Smc1aQ9CU62 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Smc1aQ9CU62 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Smc1aQ9CU62 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Smc1aQ9CU62 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Smc1aQ9CU62 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Smc1aQ9CU62 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC19.74■□□□□ 0.75
Smc1aQ9CU62 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Smc1aQ9CU62 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC19.74■□□□□ 0.75
Smc1aQ9CU62 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Smc1aQ9CU62 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Smc1aQ9CU62 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Smc1aQ9CU62 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Smc1aQ9CU62 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Smc1aQ9CU62 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Smc1aQ9CU62 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Smc1aQ9CU62 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Smc1aQ9CU62 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Smc1aQ9CU62 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Smc1aQ9CU62 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Smc1aQ9CU62 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Smc1aQ9CU62 Gm9954-202ENSMUST00000198686 4725 ntBASIC19.73■□□□□ 0.75
Smc1aQ9CU62 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Smc1aQ9CU62 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Smc1aQ9CU62 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC19.73■□□□□ 0.75
Smc1aQ9CU62 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC19.73■□□□□ 0.75
Smc1aQ9CU62 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC19.73■□□□□ 0.75
Smc1aQ9CU62 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC19.73■□□□□ 0.75
Smc1aQ9CU62 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Smc1aQ9CU62 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Smc1aQ9CU62 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Smc1aQ9CU62 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Smc1aQ9CU62 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Smc1aQ9CU62 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Smc1aQ9CU62 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Smc1aQ9CU62 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Smc1aQ9CU62 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Smc1aQ9CU62 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Smc1aQ9CU62 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Smc1aQ9CU62 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Smc1aQ9CU62 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Smc1aQ9CU62 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Smc1aQ9CU62 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
Smc1aQ9CU62 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Smc1aQ9CU62 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC19.72■□□□□ 0.75
Smc1aQ9CU62 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Smc1aQ9CU62 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Smc1aQ9CU62 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Smc1aQ9CU62 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Smc1aQ9CU62 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Smc1aQ9CU62 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smc1aQ9CU62 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smc1aQ9CU62 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smc1aQ9CU62 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smc1aQ9CU62 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smc1aQ9CU62 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smc1aQ9CU62 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smc1aQ9CU62 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smc1aQ9CU62 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smc1aQ9CU62 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smc1aQ9CU62 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smc1aQ9CU62 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC19.71■□□□□ 0.75
Smc1aQ9CU62 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC19.71■□□□□ 0.75
Smc1aQ9CU62 Gm44549-201ENSMUST00000208351 577 ntBASIC19.71■□□□□ 0.75
Smc1aQ9CU62 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smc1aQ9CU62 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smc1aQ9CU62 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smc1aQ9CU62 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Smc1aQ9CU62 Gm5828-201ENSMUST00000071842 1860 ntBASIC19.71■□□□□ 0.75
Smc1aQ9CU62 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
Smc1aQ9CU62 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC19.71■□□□□ 0.75
Smc1aQ9CU62 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Smc1aQ9CU62 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Smc1aQ9CU62 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Smc1aQ9CU62 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Smc1aQ9CU62 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Smc1aQ9CU62 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Smc1aQ9CU62 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Smc1aQ9CU62 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Smc1aQ9CU62 Gm18666-201ENSMUST00000190039 958 ntBASIC19.7■□□□□ 0.74
Smc1aQ9CU62 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC19.7■□□□□ 0.74
Smc1aQ9CU62 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Smc1aQ9CU62 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC19.7■□□□□ 0.74
Smc1aQ9CU62 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms