Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Snrnp40Q6PE01 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Snrnp40Q6PE01 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Snrnp40Q6PE01 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Snrnp40Q6PE01 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Snrnp40Q6PE01 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Snrnp40Q6PE01 Gm13401-201ENSMUST00000117074 291 ntBASIC15.58■□□□□ 0.08
Snrnp40Q6PE01 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Snrnp40Q6PE01 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
Snrnp40Q6PE01 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC15.58■□□□□ 0.08
Snrnp40Q6PE01 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Snrnp40Q6PE01 Gm7213-201ENSMUST00000215977 950 ntBASIC15.58■□□□□ 0.08
Snrnp40Q6PE01 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Snrnp40Q6PE01 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Snrnp40Q6PE01 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
Snrnp40Q6PE01 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Snrnp40Q6PE01 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Snrnp40Q6PE01 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Snrnp40Q6PE01 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Snrnp40Q6PE01 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Snrnp40Q6PE01 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Snrnp40Q6PE01 Gm38308-201ENSMUST00000194934 1809 ntBASIC15.57■□□□□ 0.08
Snrnp40Q6PE01 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Snrnp40Q6PE01 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC15.57■□□□□ 0.08
Snrnp40Q6PE01 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC15.57■□□□□ 0.08
Snrnp40Q6PE01 Gm18669-201ENSMUST00000216049 778 ntBASIC15.57■□□□□ 0.08
Snrnp40Q6PE01 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
Snrnp40Q6PE01 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Snrnp40Q6PE01 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Snrnp40Q6PE01 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Snrnp40Q6PE01 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Snrnp40Q6PE01 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Snrnp40Q6PE01 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Snrnp40Q6PE01 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Snrnp40Q6PE01 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Snrnp40Q6PE01 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Snrnp40Q6PE01 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Snrnp40Q6PE01 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Snrnp40Q6PE01 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Snrnp40Q6PE01 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Snrnp40Q6PE01 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC15.56■□□□□ 0.08
Snrnp40Q6PE01 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC15.56■□□□□ 0.08
Snrnp40Q6PE01 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Snrnp40Q6PE01 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Snrnp40Q6PE01 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Snrnp40Q6PE01 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
Snrnp40Q6PE01 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Snrnp40Q6PE01 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Snrnp40Q6PE01 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Snrnp40Q6PE01 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Snrnp40Q6PE01 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Snrnp40Q6PE01 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Snrnp40Q6PE01 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Snrnp40Q6PE01 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Snrnp40Q6PE01 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Snrnp40Q6PE01 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
Snrnp40Q6PE01 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Snrnp40Q6PE01 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Snrnp40Q6PE01 Gm7856-201ENSMUST00000117514 1493 ntBASIC15.55■□□□□ 0.08
Snrnp40Q6PE01 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
Snrnp40Q6PE01 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Snrnp40Q6PE01 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Snrnp40Q6PE01 Gm7153-201ENSMUST00000117092 455 ntBASIC15.55■□□□□ 0.08
Snrnp40Q6PE01 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC15.55■□□□□ 0.08
Snrnp40Q6PE01 Gm11355-201ENSMUST00000121120 306 ntBASIC15.55■□□□□ 0.08
Snrnp40Q6PE01 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
Snrnp40Q6PE01 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Snrnp40Q6PE01 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Snrnp40Q6PE01 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Snrnp40Q6PE01 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Snrnp40Q6PE01 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Snrnp40Q6PE01 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Snrnp40Q6PE01 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC15.55■□□□□ 0.08
Snrnp40Q6PE01 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC15.55■□□□□ 0.08
Snrnp40Q6PE01 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Snrnp40Q6PE01 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Snrnp40Q6PE01 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Snrnp40Q6PE01 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Snrnp40Q6PE01 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Snrnp40Q6PE01 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC15.54■□□□□ 0.08
Snrnp40Q6PE01 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
Snrnp40Q6PE01 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Snrnp40Q6PE01 AC133598.3-202ENSMUST00000224219 531 ntBASIC15.54■□□□□ 0.08
Snrnp40Q6PE01 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Snrnp40Q6PE01 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Snrnp40Q6PE01 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Snrnp40Q6PE01 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Snrnp40Q6PE01 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Snrnp40Q6PE01 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Snrnp40Q6PE01 Gm9731-201ENSMUST00000209480 747 ntBASIC15.53■□□□□ 0.08
Snrnp40Q6PE01 Umpk-ps-201ENSMUST00000211897 827 ntBASIC15.53■□□□□ 0.08
Snrnp40Q6PE01 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Snrnp40Q6PE01 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Snrnp40Q6PE01 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Snrnp40Q6PE01 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Snrnp40Q6PE01 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Snrnp40Q6PE01 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
Snrnp40Q6PE01 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Snrnp40Q6PE01 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
Snrnp40Q6PE01 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms