Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp49Q6P9L4 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp49Q6P9L4 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp49Q6P9L4 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC19.83■□□□□ 0.77
Usp49Q6P9L4 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
Usp49Q6P9L4 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
Usp49Q6P9L4 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
Usp49Q6P9L4 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp49Q6P9L4 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Usp49Q6P9L4 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC19.83■□□□□ 0.77
Usp49Q6P9L4 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC19.83■□□□□ 0.77
Usp49Q6P9L4 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp49Q6P9L4 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
Usp49Q6P9L4 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp49Q6P9L4 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
Usp49Q6P9L4 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp49Q6P9L4 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC19.83■□□□□ 0.76
Usp49Q6P9L4 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Usp49Q6P9L4 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp49Q6P9L4 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp49Q6P9L4 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp49Q6P9L4 Gm13401-201ENSMUST00000117074 291 ntBASIC19.82■□□□□ 0.76
Usp49Q6P9L4 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp49Q6P9L4 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC19.82■□□□□ 0.76
Usp49Q6P9L4 Gm29791-202ENSMUST00000207888 369 ntBASIC19.82■□□□□ 0.76
Usp49Q6P9L4 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp49Q6P9L4 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp49Q6P9L4 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Usp49Q6P9L4 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Usp49Q6P9L4 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC19.82■□□□□ 0.76
Usp49Q6P9L4 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Usp49Q6P9L4 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp49Q6P9L4 Gm6598-201ENSMUST00000202719 2615 ntBASIC19.81■□□□□ 0.76
Usp49Q6P9L4 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp49Q6P9L4 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp49Q6P9L4 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp49Q6P9L4 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp49Q6P9L4 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC19.81■□□□□ 0.76
Usp49Q6P9L4 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp49Q6P9L4 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp49Q6P9L4 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
Usp49Q6P9L4 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Usp49Q6P9L4 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Usp49Q6P9L4 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp49Q6P9L4 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp49Q6P9L4 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp49Q6P9L4 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp49Q6P9L4 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Usp49Q6P9L4 Gm37519-201ENSMUST00000191687 2210 ntBASIC19.8■□□□□ 0.76
Usp49Q6P9L4 Gm45560-201ENSMUST00000211492 1472 ntBASIC19.8■□□□□ 0.76
Usp49Q6P9L4 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp49Q6P9L4 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp49Q6P9L4 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp49Q6P9L4 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp49Q6P9L4 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Usp49Q6P9L4 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp49Q6P9L4 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
Usp49Q6P9L4 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp49Q6P9L4 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Usp49Q6P9L4 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp49Q6P9L4 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp49Q6P9L4 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC19.8■□□□□ 0.76
Usp49Q6P9L4 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp49Q6P9L4 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp49Q6P9L4 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp49Q6P9L4 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Usp49Q6P9L4 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Usp49Q6P9L4 Gm21596-201ENSMUST00000178049 1316 ntBASIC19.79■□□□□ 0.76
Usp49Q6P9L4 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Usp49Q6P9L4 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp49Q6P9L4 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC19.79■□□□□ 0.76
Usp49Q6P9L4 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp49Q6P9L4 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC19.79■□□□□ 0.76
Usp49Q6P9L4 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp49Q6P9L4 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp49Q6P9L4 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC19.79■□□□□ 0.76
Usp49Q6P9L4 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Usp49Q6P9L4 Gm29241-201ENSMUST00000189260 1096 ntBASIC19.79■□□□□ 0.76
Usp49Q6P9L4 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp49Q6P9L4 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp49Q6P9L4 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC19.79■□□□□ 0.76
Usp49Q6P9L4 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC19.79■□□□□ 0.76
Usp49Q6P9L4 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC19.79■□□□□ 0.76
Usp49Q6P9L4 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp49Q6P9L4 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp49Q6P9L4 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Usp49Q6P9L4 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
Usp49Q6P9L4 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC19.78■□□□□ 0.76
Usp49Q6P9L4 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Usp49Q6P9L4 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp49Q6P9L4 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC19.78■□□□□ 0.76
Usp49Q6P9L4 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp49Q6P9L4 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC19.78■□□□□ 0.76
Usp49Q6P9L4 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Usp49Q6P9L4 Gm37856-201ENSMUST00000191634 999 ntBASIC19.78■□□□□ 0.76
Usp49Q6P9L4 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC19.78■□□□□ 0.76
Usp49Q6P9L4 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp49Q6P9L4 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp49Q6P9L4 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Usp49Q6P9L4 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC19.78■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 37.2 ms