Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim27Q62158 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
Trim27Q62158 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Trim27Q62158 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim27Q62158 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC21.76■■□□□ 1.07
Trim27Q62158 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
Trim27Q62158 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
Trim27Q62158 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim27Q62158 Gm12669-201ENSMUST00000122162 1009 ntBASIC21.76■■□□□ 1.07
Trim27Q62158 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim27Q62158 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Trim27Q62158 Gm42545-201ENSMUST00000202755 922 ntBASIC21.76■■□□□ 1.07
Trim27Q62158 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim27Q62158 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC21.75■■□□□ 1.07
Trim27Q62158 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Trim27Q62158 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Trim27Q62158 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim27Q62158 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim27Q62158 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim27Q62158 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Trim27Q62158 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
Trim27Q62158 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC21.75■■□□□ 1.07
Trim27Q62158 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Trim27Q62158 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim27Q62158 AC166341.7-201ENSMUST00000221698 126 ntBASIC21.75■■□□□ 1.07
Trim27Q62158 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim27Q62158 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim27Q62158 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim27Q62158 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim27Q62158 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Trim27Q62158 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim27Q62158 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim27Q62158 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim27Q62158 Dapk1-207ENSMUST00000226059 5009 ntBASIC21.74■■□□□ 1.07
Trim27Q62158 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim27Q62158 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC21.74■■□□□ 1.07
Trim27Q62158 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim27Q62158 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Trim27Q62158 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim27Q62158 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim27Q62158 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC21.74■■□□□ 1.07
Trim27Q62158 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim27Q62158 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim27Q62158 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim27Q62158 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim27Q62158 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Trim27Q62158 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trim27Q62158 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC21.73■■□□□ 1.07
Trim27Q62158 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Trim27Q62158 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Trim27Q62158 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim27Q62158 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim27Q62158 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC21.73■■□□□ 1.07
Trim27Q62158 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim27Q62158 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC21.73■■□□□ 1.07
Trim27Q62158 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim27Q62158 Gm5643-201ENSMUST00000117081 966 ntBASIC21.73■■□□□ 1.07
Trim27Q62158 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim27Q62158 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC21.73■■□□□ 1.07
Trim27Q62158 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
Trim27Q62158 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim27Q62158 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Trim27Q62158 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC21.73■■□□□ 1.07
Trim27Q62158 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim27Q62158 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Trim27Q62158 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC21.73■■□□□ 1.07
Trim27Q62158 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Trim27Q62158 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Trim27Q62158 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC21.73■■□□□ 1.07
Trim27Q62158 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim27Q62158 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trim27Q62158 Nrn1-203ENSMUST00000223611 1443 ntBASIC21.72■■□□□ 1.07
Trim27Q62158 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim27Q62158 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim27Q62158 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim27Q62158 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim27Q62158 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
Trim27Q62158 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Trim27Q62158 Gm18666-201ENSMUST00000190039 958 ntBASIC21.72■■□□□ 1.07
Trim27Q62158 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Trim27Q62158 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Trim27Q62158 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim27Q62158 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim27Q62158 AC125311.2-201ENSMUST00000227477 1940 ntBASIC21.72■■□□□ 1.07
Trim27Q62158 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim27Q62158 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim27Q62158 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trim27Q62158 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Trim27Q62158 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Trim27Q62158 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim27Q62158 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim27Q62158 Gm43272-201ENSMUST00000200599 1584 ntBASIC21.71■■□□□ 1.07
Trim27Q62158 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim27Q62158 Gm6576-201ENSMUST00000169678 883 ntBASIC21.71■■□□□ 1.07
Trim27Q62158 Gm37292-201ENSMUST00000192062 758 ntBASIC21.71■■□□□ 1.07
Trim27Q62158 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC21.71■■□□□ 1.07
Trim27Q62158 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim27Q62158 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
Trim27Q62158 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trim27Q62158 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms