Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Usp28Q5I043 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp28Q5I043 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC20.13■□□□□ 0.81
Usp28Q5I043 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp28Q5I043 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Usp28Q5I043 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC20.12■□□□□ 0.81
Usp28Q5I043 AC108858.1-201ENSMUST00000228461 1498 ntBASIC20.12■□□□□ 0.81
Usp28Q5I043 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usp28Q5I043 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
Usp28Q5I043 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC20.12■□□□□ 0.81
Usp28Q5I043 Gm29791-202ENSMUST00000207888 369 ntBASIC20.12■□□□□ 0.81
Usp28Q5I043 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usp28Q5I043 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usp28Q5I043 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
Usp28Q5I043 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usp28Q5I043 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Usp28Q5I043 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usp28Q5I043 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Usp28Q5I043 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
Usp28Q5I043 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp28Q5I043 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Usp28Q5I043 Mir8112-201ENSMUST00000184382 131 ntBASIC20.11■□□□□ 0.81
Usp28Q5I043 Gm8495-201ENSMUST00000188740 694 ntBASIC20.11■□□□□ 0.81
Usp28Q5I043 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC20.11■□□□□ 0.81
Usp28Q5I043 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp28Q5I043 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
Usp28Q5I043 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Usp28Q5I043 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp28Q5I043 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp28Q5I043 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp28Q5I043 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
Usp28Q5I043 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC20.11■□□□□ 0.81
Usp28Q5I043 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC20.11■□□□□ 0.81
Usp28Q5I043 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp28Q5I043 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp28Q5I043 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Usp28Q5I043 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp28Q5I043 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC20.1■□□□□ 0.81
Usp28Q5I043 AC125311.2-201ENSMUST00000227477 1940 ntBASIC20.1■□□□□ 0.81
Usp28Q5I043 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp28Q5I043 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp28Q5I043 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Usp28Q5I043 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp28Q5I043 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp28Q5I043 Mir2861-201ENSMUST00000175539 82 ntBASIC20.1■□□□□ 0.81
Usp28Q5I043 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp28Q5I043 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp28Q5I043 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Usp28Q5I043 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Usp28Q5I043 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Usp28Q5I043 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp28Q5I043 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Usp28Q5I043 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp28Q5I043 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp28Q5I043 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp28Q5I043 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp28Q5I043 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC20.09■□□□□ 0.81
Usp28Q5I043 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC20.09■□□□□ 0.81
Usp28Q5I043 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp28Q5I043 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC20.09■□□□□ 0.81
Usp28Q5I043 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Usp28Q5I043 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp28Q5I043 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC20.08■□□□□ 0.81
Usp28Q5I043 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Usp28Q5I043 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC20.08■□□□□ 0.81
Usp28Q5I043 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Usp28Q5I043 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC20.08■□□□□ 0.81
Usp28Q5I043 Gm27405-201ENSMUST00000184201 112 ntBASIC20.08■□□□□ 0.81
Usp28Q5I043 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Usp28Q5I043 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Usp28Q5I043 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Usp28Q5I043 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC20.08■□□□□ 0.81
Usp28Q5I043 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC20.08■□□□□ 0.81
Usp28Q5I043 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Usp28Q5I043 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Usp28Q5I043 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.8
Usp28Q5I043 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Usp28Q5I043 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Usp28Q5I043 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp28Q5I043 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp28Q5I043 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp28Q5I043 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC20.07■□□□□ 0.8
Usp28Q5I043 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp28Q5I043 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp28Q5I043 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC20.07■□□□□ 0.8
Usp28Q5I043 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp28Q5I043 Rab3c-203ENSMUST00000224180 967 ntBASIC20.07■□□□□ 0.8
Usp28Q5I043 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp28Q5I043 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp28Q5I043 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp28Q5I043 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC20.07■□□□□ 0.8
Usp28Q5I043 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp28Q5I043 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp28Q5I043 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp28Q5I043 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Usp28Q5I043 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
Usp28Q5I043 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC20.07■□□□□ 0.8
Usp28Q5I043 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp28Q5I043 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp28Q5I043 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms