Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upf3aQ3ULJ3 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC18.64■□□□□ 0.57
Upf3aQ3ULJ3 Gm29791-202ENSMUST00000207888 369 ntBASIC18.64■□□□□ 0.57
Upf3aQ3ULJ3 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upf3aQ3ULJ3 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Upf3aQ3ULJ3 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upf3aQ3ULJ3 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upf3aQ3ULJ3 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Upf3aQ3ULJ3 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Upf3aQ3ULJ3 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Upf3aQ3ULJ3 Gm25016-201ENSMUST00000158399 131 ntBASIC18.63■□□□□ 0.57
Upf3aQ3ULJ3 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Upf3aQ3ULJ3 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Upf3aQ3ULJ3 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Upf3aQ3ULJ3 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Upf3aQ3ULJ3 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Upf3aQ3ULJ3 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Upf3aQ3ULJ3 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Upf3aQ3ULJ3 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC18.63■□□□□ 0.57
Upf3aQ3ULJ3 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Upf3aQ3ULJ3 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Upf3aQ3ULJ3 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Upf3aQ3ULJ3 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC18.62■□□□□ 0.57
Upf3aQ3ULJ3 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Upf3aQ3ULJ3 Gm7370-201ENSMUST00000219471 767 ntBASIC18.62■□□□□ 0.57
Upf3aQ3ULJ3 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Upf3aQ3ULJ3 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
Upf3aQ3ULJ3 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Upf3aQ3ULJ3 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Upf3aQ3ULJ3 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3aQ3ULJ3 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3aQ3ULJ3 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3aQ3ULJ3 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3aQ3ULJ3 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Upf3aQ3ULJ3 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3aQ3ULJ3 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC18.61■□□□□ 0.57
Upf3aQ3ULJ3 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3aQ3ULJ3 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3aQ3ULJ3 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC18.61■□□□□ 0.57
Upf3aQ3ULJ3 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3aQ3ULJ3 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3aQ3ULJ3 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3aQ3ULJ3 Gm5784-201ENSMUST00000179344 2478 ntBASIC18.61■□□□□ 0.57
Upf3aQ3ULJ3 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3aQ3ULJ3 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Upf3aQ3ULJ3 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3aQ3ULJ3 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3aQ3ULJ3 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf3aQ3ULJ3 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3aQ3ULJ3 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3aQ3ULJ3 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Upf3aQ3ULJ3 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3aQ3ULJ3 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3aQ3ULJ3 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3aQ3ULJ3 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3aQ3ULJ3 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3aQ3ULJ3 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3aQ3ULJ3 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC18.6■□□□□ 0.57
Upf3aQ3ULJ3 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
Upf3aQ3ULJ3 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC18.6■□□□□ 0.57
Upf3aQ3ULJ3 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3aQ3ULJ3 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3aQ3ULJ3 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3aQ3ULJ3 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Upf3aQ3ULJ3 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3aQ3ULJ3 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3aQ3ULJ3 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3aQ3ULJ3 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3aQ3ULJ3 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3aQ3ULJ3 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3aQ3ULJ3 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Upf3aQ3ULJ3 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf3aQ3ULJ3 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf3aQ3ULJ3 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf3aQ3ULJ3 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Upf3aQ3ULJ3 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC18.59■□□□□ 0.57
Upf3aQ3ULJ3 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Upf3aQ3ULJ3 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Upf3aQ3ULJ3 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Upf3aQ3ULJ3 Ank2-226ENSMUST00000189368 339 ntBASIC18.59■□□□□ 0.57
Upf3aQ3ULJ3 AC154471.1-201ENSMUST00000224418 436 ntBASIC18.59■□□□□ 0.57
Upf3aQ3ULJ3 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Upf3aQ3ULJ3 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Upf3aQ3ULJ3 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf3aQ3ULJ3 Gm8258-201ENSMUST00000055593 1449 ntBASIC18.58■□□□□ 0.57
Upf3aQ3ULJ3 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Upf3aQ3ULJ3 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Upf3aQ3ULJ3 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
Upf3aQ3ULJ3 Gm14859-201ENSMUST00000117752 357 ntBASIC18.58■□□□□ 0.56
Upf3aQ3ULJ3 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upf3aQ3ULJ3 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Upf3aQ3ULJ3 Gm27741-201ENSMUST00000185060 237 ntBASIC18.58■□□□□ 0.56
Upf3aQ3ULJ3 Gm21559-201ENSMUST00000220638 855 ntBASIC18.58■□□□□ 0.56
Upf3aQ3ULJ3 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Upf3aQ3ULJ3 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upf3aQ3ULJ3 Gm8587-201ENSMUST00000076538 843 ntBASIC18.58■□□□□ 0.56
Upf3aQ3ULJ3 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upf3aQ3ULJ3 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upf3aQ3ULJ3 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upf3aQ3ULJ3 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms