Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Limch1Q3UH68 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Limch1Q3UH68 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Limch1Q3UH68 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Limch1Q3UH68 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC20.81■□□□□ 0.92
Limch1Q3UH68 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Limch1Q3UH68 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Limch1Q3UH68 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Limch1Q3UH68 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Limch1Q3UH68 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Limch1Q3UH68 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Limch1Q3UH68 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Limch1Q3UH68 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Limch1Q3UH68 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Limch1Q3UH68 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Limch1Q3UH68 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC20.8■□□□□ 0.92
Limch1Q3UH68 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC20.8■□□□□ 0.92
Limch1Q3UH68 AC154649.1-201ENSMUST00000227392 384 ntBASIC20.8■□□□□ 0.92
Limch1Q3UH68 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Limch1Q3UH68 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Limch1Q3UH68 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Limch1Q3UH68 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Limch1Q3UH68 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Limch1Q3UH68 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Limch1Q3UH68 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Limch1Q3UH68 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Limch1Q3UH68 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Limch1Q3UH68 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Limch1Q3UH68 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Limch1Q3UH68 Gm2399-201ENSMUST00000104944 225 ntBASIC20.79■□□□□ 0.92
Limch1Q3UH68 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Limch1Q3UH68 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Limch1Q3UH68 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Limch1Q3UH68 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Limch1Q3UH68 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Limch1Q3UH68 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC20.79■□□□□ 0.92
Limch1Q3UH68 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC20.79■□□□□ 0.92
Limch1Q3UH68 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC20.79■□□□□ 0.92
Limch1Q3UH68 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC20.79■□□□□ 0.92
Limch1Q3UH68 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
Limch1Q3UH68 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Limch1Q3UH68 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Limch1Q3UH68 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Limch1Q3UH68 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC20.78■□□□□ 0.92
Limch1Q3UH68 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Limch1Q3UH68 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC20.78■□□□□ 0.92
Limch1Q3UH68 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Limch1Q3UH68 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Limch1Q3UH68 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Limch1Q3UH68 AC135963.1-201ENSMUST00000211640 717 ntBASIC20.78■□□□□ 0.92
Limch1Q3UH68 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Limch1Q3UH68 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Limch1Q3UH68 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC20.78■□□□□ 0.92
Limch1Q3UH68 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Limch1Q3UH68 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Limch1Q3UH68 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Limch1Q3UH68 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Limch1Q3UH68 Nrn1-203ENSMUST00000223611 1443 ntBASIC20.78■□□□□ 0.92
Limch1Q3UH68 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Limch1Q3UH68 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Limch1Q3UH68 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Limch1Q3UH68 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Limch1Q3UH68 Gm38285-201ENSMUST00000192928 922 ntBASIC20.77■□□□□ 0.92
Limch1Q3UH68 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
Limch1Q3UH68 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Limch1Q3UH68 Gm43702-201ENSMUST00000198772 2546 ntBASIC20.77■□□□□ 0.92
Limch1Q3UH68 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC20.77■□□□□ 0.92
Limch1Q3UH68 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Limch1Q3UH68 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC20.77■□□□□ 0.91
Limch1Q3UH68 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC20.77■□□□□ 0.91
Limch1Q3UH68 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Limch1Q3UH68 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Limch1Q3UH68 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Limch1Q3UH68 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC20.76■□□□□ 0.91
Limch1Q3UH68 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Limch1Q3UH68 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Limch1Q3UH68 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Limch1Q3UH68 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Limch1Q3UH68 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Limch1Q3UH68 Gm715-201ENSMUST00000117865 831 ntBASIC20.76■□□□□ 0.91
Limch1Q3UH68 Gm10698-201ENSMUST00000182663 604 ntBASIC20.76■□□□□ 0.91
Limch1Q3UH68 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC20.76■□□□□ 0.91
Limch1Q3UH68 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC20.76■□□□□ 0.91
Limch1Q3UH68 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Limch1Q3UH68 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Limch1Q3UH68 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Limch1Q3UH68 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Limch1Q3UH68 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Limch1Q3UH68 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Limch1Q3UH68 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Limch1Q3UH68 Idnk-204ENSMUST00000226010 1898 ntBASIC20.75■□□□□ 0.91
Limch1Q3UH68 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Limch1Q3UH68 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Limch1Q3UH68 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Limch1Q3UH68 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Limch1Q3UH68 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Limch1Q3UH68 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC20.75■□□□□ 0.91
Limch1Q3UH68 AL672049.1-201ENSMUST00000197943 91 ntBASIC20.75■□□□□ 0.91
Limch1Q3UH68 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Limch1Q3UH68 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms