Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC17.37■□□□□ 0.37
Col9a1Q05722 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col9a1Q05722 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC17.37■□□□□ 0.37
Col9a1Q05722 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC17.37■□□□□ 0.37
Col9a1Q05722 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col9a1Q05722 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Col9a1Q05722 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col9a1Q05722 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Col9a1Q05722 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col9a1Q05722 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Col9a1Q05722 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC17.37■□□□□ 0.37
Col9a1Q05722 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col9a1Q05722 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col9a1Q05722 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col9a1Q05722 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col9a1Q05722 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col9a1Q05722 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Col9a1Q05722 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col9a1Q05722 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC17.36■□□□□ 0.37
Col9a1Q05722 Gm15794-201ENSMUST00000120182 631 ntBASIC17.36■□□□□ 0.37
Col9a1Q05722 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Col9a1Q05722 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC17.36■□□□□ 0.37
Col9a1Q05722 Psmb5-202ENSMUST00000227257 622 ntBASIC17.36■□□□□ 0.37
Col9a1Q05722 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col9a1Q05722 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC17.36■□□□□ 0.37
Col9a1Q05722 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col9a1Q05722 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Col9a1Q05722 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Col9a1Q05722 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col9a1Q05722 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col9a1Q05722 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col9a1Q05722 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Col9a1Q05722 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col9a1Q05722 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Col9a1Q05722 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col9a1Q05722 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Col9a1Q05722 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC17.35■□□□□ 0.37
Col9a1Q05722 Gm19087-201ENSMUST00000191430 946 ntBASIC17.35■□□□□ 0.37
Col9a1Q05722 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC17.35■□□□□ 0.37
Col9a1Q05722 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Col9a1Q05722 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Col9a1Q05722 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Col9a1Q05722 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col9a1Q05722 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col9a1Q05722 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Col9a1Q05722 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col9a1Q05722 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col9a1Q05722 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Col9a1Q05722 Lmo3-206ENSMUST00000163024 1331 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col9a1Q05722 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC17.34■□□□□ 0.37
Col9a1Q05722 Gm8309-201ENSMUST00000206627 1448 ntBASIC17.34■□□□□ 0.37
Col9a1Q05722 Arhgef33-209ENSMUST00000225223 714 ntBASIC17.34■□□□□ 0.37
Col9a1Q05722 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Col9a1Q05722 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC17.34■□□□□ 0.37
Col9a1Q05722 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Col9a1Q05722 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
Col9a1Q05722 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Col9a1Q05722 Gm15222-202ENSMUST00000228667 1726 ntBASIC17.33■□□□□ 0.37
Col9a1Q05722 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Col9a1Q05722 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col9a1Q05722 Gm7935-201ENSMUST00000100555 1278 ntBASIC17.33■□□□□ 0.36
Col9a1Q05722 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC17.33■□□□□ 0.36
Col9a1Q05722 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Col9a1Q05722 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC17.33■□□□□ 0.36
Col9a1Q05722 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC17.33■□□□□ 0.36
Col9a1Q05722 Gm10060-201ENSMUST00000212002 111 ntBASIC17.33■□□□□ 0.36
Col9a1Q05722 CT009738.1-201ENSMUST00000219031 809 ntBASIC17.33■□□□□ 0.36
Col9a1Q05722 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col9a1Q05722 Hist1h2al-201ENSMUST00000091708 339 ntBASIC17.33■□□□□ 0.36
Col9a1Q05722 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col9a1Q05722 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Col9a1Q05722 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col9a1Q05722 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col9a1Q05722 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col9a1Q05722 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col9a1Q05722 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col9a1Q05722 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col9a1Q05722 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col9a1Q05722 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC17.33■□□□□ 0.36
Col9a1Q05722 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col9a1Q05722 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Col9a1Q05722 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Col9a1Q05722 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col9a1Q05722 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col9a1Q05722 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col9a1Q05722 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Col9a1Q05722 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col9a1Q05722 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
Col9a1Q05722 Gm37722-201ENSMUST00000193757 208 ntBASIC17.32■□□□□ 0.36
Col9a1Q05722 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC17.32■□□□□ 0.36
Col9a1Q05722 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col9a1Q05722 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC17.32■□□□□ 0.36
Col9a1Q05722 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Col9a1Q05722 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col9a1Q05722 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col9a1Q05722 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Col9a1Q05722 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Col9a1Q05722 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Col9a1Q05722 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col9a1Q05722 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms