Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cd40lgP27548 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Cd40lgP27548 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cd40lgP27548 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cd40lgP27548 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cd40lgP27548 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cd40lgP27548 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cd40lgP27548 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC16.31■□□□□ 0.2
Cd40lgP27548 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cd40lgP27548 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Cd40lgP27548 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC16.31■□□□□ 0.2
Cd40lgP27548 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC16.31■□□□□ 0.2
Cd40lgP27548 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Cd40lgP27548 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Cd40lgP27548 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Cd40lgP27548 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Cd40lgP27548 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cd40lgP27548 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cd40lgP27548 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Cd40lgP27548 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC16.3■□□□□ 0.2
Cd40lgP27548 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cd40lgP27548 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cd40lgP27548 Gm21596-201ENSMUST00000178049 1316 ntBASIC16.3■□□□□ 0.2
Cd40lgP27548 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC16.3■□□□□ 0.2
Cd40lgP27548 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Cd40lgP27548 Gm37856-201ENSMUST00000191634 999 ntBASIC16.3■□□□□ 0.2
Cd40lgP27548 Gm37805-201ENSMUST00000192612 1094 ntBASIC16.3■□□□□ 0.2
Cd40lgP27548 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC16.3■□□□□ 0.2
Cd40lgP27548 Gm44878-201ENSMUST00000205812 1295 ntBASIC16.3■□□□□ 0.2
Cd40lgP27548 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cd40lgP27548 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cd40lgP27548 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Cd40lgP27548 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cd40lgP27548 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Cd40lgP27548 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Cd40lgP27548 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Cd40lgP27548 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Cd40lgP27548 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Cd40lgP27548 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cd40lgP27548 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cd40lgP27548 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cd40lgP27548 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cd40lgP27548 Rncr4-201ENSMUST00000194541 2234 ntBASIC16.29■□□□□ 0.2
Cd40lgP27548 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cd40lgP27548 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cd40lgP27548 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
Cd40lgP27548 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cd40lgP27548 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC16.29■□□□□ 0.2
Cd40lgP27548 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cd40lgP27548 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cd40lgP27548 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cd40lgP27548 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cd40lgP27548 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cd40lgP27548 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cd40lgP27548 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Cd40lgP27548 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cd40lgP27548 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cd40lgP27548 Gm7856-201ENSMUST00000117514 1493 ntBASIC16.29■□□□□ 0.2
Cd40lgP27548 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Cd40lgP27548 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cd40lgP27548 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Cd40lgP27548 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Cd40lgP27548 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cd40lgP27548 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Cd40lgP27548 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Cd40lgP27548 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cd40lgP27548 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC16.28■□□□□ 0.2
Cd40lgP27548 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cd40lgP27548 Gm13168-201ENSMUST00000121771 632 ntBASIC16.28■□□□□ 0.2
Cd40lgP27548 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cd40lgP27548 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Cd40lgP27548 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Cd40lgP27548 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Cd40lgP27548 Gm9194-201ENSMUST00000220749 1447 ntBASIC16.28■□□□□ 0.2
Cd40lgP27548 Dio3-201ENSMUST00000097228 1449 ntBASIC16.28■□□□□ 0.2
Cd40lgP27548 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cd40lgP27548 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cd40lgP27548 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cd40lgP27548 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cd40lgP27548 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cd40lgP27548 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Cd40lgP27548 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cd40lgP27548 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cd40lgP27548 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cd40lgP27548 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cd40lgP27548 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cd40lgP27548 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC16.27■□□□□ 0.2
Cd40lgP27548 Gm22240-201ENSMUST00000175225 82 ntBASIC16.27■□□□□ 0.2
Cd40lgP27548 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Cd40lgP27548 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Cd40lgP27548 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Cd40lgP27548 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cd40lgP27548 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Cd40lgP27548 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cd40lgP27548 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cd40lgP27548 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.19
Cd40lgP27548 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.19
Cd40lgP27548 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Cd40lgP27548 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Cd40lgP27548 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms