Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Msx1P13297 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Msx1P13297 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Msx1P13297 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Msx1P13297 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC16.78■□□□□ 0.28
Msx1P13297 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Msx1P13297 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Msx1P13297 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Msx1P13297 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC16.77■□□□□ 0.28
Msx1P13297 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Msx1P13297 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Msx1P13297 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Msx1P13297 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Msx1P13297 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Msx1P13297 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Msx1P13297 Gm11927-201ENSMUST00000118472 759 ntBASIC16.77■□□□□ 0.28
Msx1P13297 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC16.77■□□□□ 0.28
Msx1P13297 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Msx1P13297 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Msx1P13297 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC16.77■□□□□ 0.28
Msx1P13297 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Msx1P13297 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Msx1P13297 Gm5953-201ENSMUST00000220644 2616 ntBASIC16.77■□□□□ 0.27
Msx1P13297 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Msx1P13297 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
Msx1P13297 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
Msx1P13297 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Msx1P13297 Fam105a-203ENSMUST00000226170 3043 ntBASIC16.76■□□□□ 0.27
Msx1P13297 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC16.76■□□□□ 0.27
Msx1P13297 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Msx1P13297 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Msx1P13297 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC16.76■□□□□ 0.27
Msx1P13297 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Msx1P13297 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Msx1P13297 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC16.76■□□□□ 0.27
Msx1P13297 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Msx1P13297 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Msx1P13297 Gm8668-201ENSMUST00000120559 1447 ntBASIC16.76■□□□□ 0.27
Msx1P13297 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Msx1P13297 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Msx1P13297 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Msx1P13297 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Msx1P13297 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Msx1P13297 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
Msx1P13297 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Msx1P13297 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Msx1P13297 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Msx1P13297 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Msx1P13297 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Msx1P13297 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Msx1P13297 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Msx1P13297 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Msx1P13297 Gm7367-201ENSMUST00000057611 492 ntBASIC16.75■□□□□ 0.27
Msx1P13297 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Msx1P13297 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Msx1P13297 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Msx1P13297 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Msx1P13297 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Msx1P13297 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Msx1P13297 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC16.75■□□□□ 0.27
Msx1P13297 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Msx1P13297 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msx1P13297 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Msx1P13297 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Msx1P13297 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC16.74■□□□□ 0.27
Msx1P13297 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msx1P13297 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msx1P13297 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Msx1P13297 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msx1P13297 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msx1P13297 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
Msx1P13297 Gm30025-201ENSMUST00000218555 728 ntBASIC16.74■□□□□ 0.27
Msx1P13297 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msx1P13297 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msx1P13297 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Msx1P13297 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msx1P13297 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msx1P13297 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msx1P13297 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
Msx1P13297 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC16.74■□□□□ 0.27
Msx1P13297 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
Msx1P13297 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
Msx1P13297 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msx1P13297 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msx1P13297 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Msx1P13297 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msx1P13297 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msx1P13297 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Msx1P13297 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Msx1P13297 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Msx1P13297 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Msx1P13297 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Msx1P13297 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC16.73■□□□□ 0.27
Msx1P13297 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Msx1P13297 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Msx1P13297 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
Msx1P13297 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC16.73■□□□□ 0.27
Msx1P13297 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC16.73■□□□□ 0.27
Msx1P13297 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Msx1P13297 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms