Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Chmp6P0C0A3 AC121961.1-201ENSMUST00000218594 1779 ntBASIC19.26■□□□□ 0.67
Chmp6P0C0A3 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Chmp6P0C0A3 Gm21596-201ENSMUST00000178049 1316 ntBASIC19.25■□□□□ 0.67
Chmp6P0C0A3 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Chmp6P0C0A3 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Chmp6P0C0A3 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Chmp6P0C0A3 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Chmp6P0C0A3 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Chmp6P0C0A3 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
Chmp6P0C0A3 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC19.25■□□□□ 0.67
Chmp6P0C0A3 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Chmp6P0C0A3 Gm11249-201ENSMUST00000117071 859 ntBASIC19.25■□□□□ 0.67
Chmp6P0C0A3 Gm11927-201ENSMUST00000118472 759 ntBASIC19.25■□□□□ 0.67
Chmp6P0C0A3 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Chmp6P0C0A3 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Chmp6P0C0A3 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Chmp6P0C0A3 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Chmp6P0C0A3 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Chmp6P0C0A3 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Chmp6P0C0A3 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Chmp6P0C0A3 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Chmp6P0C0A3 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Chmp6P0C0A3 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Chmp6P0C0A3 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Chmp6P0C0A3 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Chmp6P0C0A3 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Chmp6P0C0A3 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Chmp6P0C0A3 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Chmp6P0C0A3 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC19.24■□□□□ 0.67
Chmp6P0C0A3 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Chmp6P0C0A3 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Chmp6P0C0A3 Fst-202ENSMUST00000223640 2612 ntBASIC19.24■□□□□ 0.67
Chmp6P0C0A3 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Chmp6P0C0A3 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Chmp6P0C0A3 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Chmp6P0C0A3 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Chmp6P0C0A3 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC19.24■□□□□ 0.67
Chmp6P0C0A3 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Chmp6P0C0A3 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Chmp6P0C0A3 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC19.23■□□□□ 0.67
Chmp6P0C0A3 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Chmp6P0C0A3 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Chmp6P0C0A3 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Chmp6P0C0A3 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Chmp6P0C0A3 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Chmp6P0C0A3 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Chmp6P0C0A3 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC19.23■□□□□ 0.67
Chmp6P0C0A3 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC19.23■□□□□ 0.67
Chmp6P0C0A3 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Chmp6P0C0A3 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Chmp6P0C0A3 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Chmp6P0C0A3 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Chmp6P0C0A3 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Chmp6P0C0A3 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Chmp6P0C0A3 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Chmp6P0C0A3 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC19.23■□□□□ 0.67
Chmp6P0C0A3 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Chmp6P0C0A3 Gm38345-201ENSMUST00000192635 1748 ntBASIC19.22■□□□□ 0.67
Chmp6P0C0A3 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Chmp6P0C0A3 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Chmp6P0C0A3 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Chmp6P0C0A3 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Chmp6P0C0A3 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Chmp6P0C0A3 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Chmp6P0C0A3 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Chmp6P0C0A3 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Chmp6P0C0A3 Zfp783-201ENSMUST00000095946 670 ntBASIC19.22■□□□□ 0.67
Chmp6P0C0A3 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC19.22■□□□□ 0.67
Chmp6P0C0A3 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Chmp6P0C0A3 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Chmp6P0C0A3 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Chmp6P0C0A3 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Chmp6P0C0A3 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Chmp6P0C0A3 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Chmp6P0C0A3 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Chmp6P0C0A3 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Chmp6P0C0A3 Gm44544-201ENSMUST00000207052 1844 ntBASIC19.21■□□□□ 0.67
Chmp6P0C0A3 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Chmp6P0C0A3 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Chmp6P0C0A3 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Chmp6P0C0A3 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
Chmp6P0C0A3 Gm13168-201ENSMUST00000121771 632 ntBASIC19.21■□□□□ 0.67
Chmp6P0C0A3 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Chmp6P0C0A3 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Chmp6P0C0A3 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Chmp6P0C0A3 Mtag2-201ENSMUST00000058665 714 ntBASIC19.21■□□□□ 0.67
Chmp6P0C0A3 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Chmp6P0C0A3 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Chmp6P0C0A3 Gm43213-201ENSMUST00000151866 1790 ntBASIC19.21■□□□□ 0.67
Chmp6P0C0A3 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC19.21■□□□□ 0.67
Chmp6P0C0A3 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Chmp6P0C0A3 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Chmp6P0C0A3 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
Chmp6P0C0A3 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Chmp6P0C0A3 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
Chmp6P0C0A3 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Chmp6P0C0A3 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Chmp6P0C0A3 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Chmp6P0C0A3 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms