Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Lmx1bO88609 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Lmx1bO88609 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC16.01■□□□□ 0.15
Lmx1bO88609 AC135963.1-201ENSMUST00000211640 717 ntBASIC16.01■□□□□ 0.15
Lmx1bO88609 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Lmx1bO88609 Gm5417-201ENSMUST00000079706 384 ntBASIC16.01■□□□□ 0.15
Lmx1bO88609 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Lmx1bO88609 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Lmx1bO88609 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC16.01■□□□□ 0.15
Lmx1bO88609 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Lmx1bO88609 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Lmx1bO88609 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Lmx1bO88609 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Lmx1bO88609 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Lmx1bO88609 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC16■□□□□ 0.15
Lmx1bO88609 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Lmx1bO88609 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Lmx1bO88609 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Lmx1bO88609 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Lmx1bO88609 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC16■□□□□ 0.15
Lmx1bO88609 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Lmx1bO88609 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Lmx1bO88609 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC16■□□□□ 0.15
Lmx1bO88609 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Lmx1bO88609 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC16■□□□□ 0.15
Lmx1bO88609 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
Lmx1bO88609 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Lmx1bO88609 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC16■□□□□ 0.15
Lmx1bO88609 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Lmx1bO88609 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Lmx1bO88609 Gm45906-201ENSMUST00000208911 1430 ntBASIC16■□□□□ 0.15
Lmx1bO88609 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC16■□□□□ 0.15
Lmx1bO88609 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC16■□□□□ 0.15
Lmx1bO88609 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Lmx1bO88609 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Lmx1bO88609 Gm44832-201ENSMUST00000208849 2303 ntBASIC16■□□□□ 0.15
Lmx1bO88609 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Lmx1bO88609 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Lmx1bO88609 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC16■□□□□ 0.15
Lmx1bO88609 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Lmx1bO88609 AC124581.1-201ENSMUST00000225416 1399 ntBASIC16■□□□□ 0.15
Lmx1bO88609 Gm38345-201ENSMUST00000192635 1748 ntBASIC15.99■□□□□ 0.15
Lmx1bO88609 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Lmx1bO88609 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lmx1bO88609 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lmx1bO88609 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lmx1bO88609 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC15.99■□□□□ 0.15
Lmx1bO88609 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lmx1bO88609 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Lmx1bO88609 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC15.99■□□□□ 0.15
Lmx1bO88609 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
Lmx1bO88609 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC15.99■□□□□ 0.15
Lmx1bO88609 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC15.99■□□□□ 0.15
Lmx1bO88609 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC15.99■□□□□ 0.15
Lmx1bO88609 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lmx1bO88609 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Lmx1bO88609 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC15.99■□□□□ 0.15
Lmx1bO88609 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Lmx1bO88609 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Lmx1bO88609 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lmx1bO88609 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Lmx1bO88609 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Lmx1bO88609 Gm45141-201ENSMUST00000206502 1888 ntBASIC15.99■□□□□ 0.15
Lmx1bO88609 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Lmx1bO88609 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lmx1bO88609 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC15.99■□□□□ 0.15
Lmx1bO88609 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lmx1bO88609 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC15.98■□□□□ 0.15
Lmx1bO88609 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Lmx1bO88609 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Lmx1bO88609 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC15.98■□□□□ 0.15
Lmx1bO88609 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC15.98■□□□□ 0.15
Lmx1bO88609 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
Lmx1bO88609 Gm13836-201ENSMUST00000121159 501 ntBASIC15.98■□□□□ 0.15
Lmx1bO88609 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Lmx1bO88609 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Lmx1bO88609 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
Lmx1bO88609 Gm9194-201ENSMUST00000220749 1447 ntBASIC15.98■□□□□ 0.15
Lmx1bO88609 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Lmx1bO88609 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Lmx1bO88609 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Lmx1bO88609 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Lmx1bO88609 Gm38308-201ENSMUST00000194934 1809 ntBASIC15.98■□□□□ 0.15
Lmx1bO88609 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Lmx1bO88609 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Lmx1bO88609 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
Lmx1bO88609 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
Lmx1bO88609 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Lmx1bO88609 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Lmx1bO88609 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Lmx1bO88609 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC15.97■□□□□ 0.15
Lmx1bO88609 Gm12382-201ENSMUST00000122005 922 ntBASIC15.97■□□□□ 0.15
Lmx1bO88609 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC15.97■□□□□ 0.15
Lmx1bO88609 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Lmx1bO88609 Gm16042-201ENSMUST00000204813 1247 ntBASIC15.97■□□□□ 0.15
Lmx1bO88609 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC15.97■□□□□ 0.15
Lmx1bO88609 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Lmx1bO88609 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Lmx1bO88609 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Lmx1bO88609 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms