Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC14.71□□□□□ -0.05
Hmgb3O54879 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Hmgb3O54879 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Hmgb3O54879 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Hmgb3O54879 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Hmgb3O54879 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Hmgb3O54879 Gm38308-201ENSMUST00000194934 1809 ntBASIC14.71□□□□□ -0.06
Hmgb3O54879 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Hmgb3O54879 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Hmgb3O54879 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Hmgb3O54879 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC14.7□□□□□ -0.06
Hmgb3O54879 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Hmgb3O54879 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Hmgb3O54879 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Hmgb3O54879 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Hmgb3O54879 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Hmgb3O54879 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Hmgb3O54879 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Hmgb3O54879 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Hmgb3O54879 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Hmgb3O54879 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Hmgb3O54879 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
Hmgb3O54879 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Hmgb3O54879 Gm9207-201ENSMUST00000198773 1115 ntBASIC14.7□□□□□ -0.06
Hmgb3O54879 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Hmgb3O54879 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Hmgb3O54879 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Hmgb3O54879 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Hmgb3O54879 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Hmgb3O54879 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC14.7□□□□□ -0.06
Hmgb3O54879 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Hmgb3O54879 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Hmgb3O54879 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Hmgb3O54879 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Hmgb3O54879 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Hmgb3O54879 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Hmgb3O54879 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Hmgb3O54879 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC14.7□□□□□ -0.06
Hmgb3O54879 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Hmgb3O54879 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC14.69□□□□□ -0.06
Hmgb3O54879 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Hmgb3O54879 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Hmgb3O54879 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Hmgb3O54879 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Hmgb3O54879 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC14.69□□□□□ -0.06
Hmgb3O54879 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
Hmgb3O54879 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Hmgb3O54879 Ddx41-204ENSMUST00000224765 2199 ntBASIC14.69□□□□□ -0.06
Hmgb3O54879 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC14.69□□□□□ -0.06
Hmgb3O54879 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Hmgb3O54879 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Hmgb3O54879 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC14.69□□□□□ -0.06
Hmgb3O54879 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Hmgb3O54879 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Hmgb3O54879 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Hmgb3O54879 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Hmgb3O54879 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Hmgb3O54879 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Hmgb3O54879 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Hmgb3O54879 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Hmgb3O54879 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Hmgb3O54879 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Hmgb3O54879 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
Hmgb3O54879 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Hmgb3O54879 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC14.68□□□□□ -0.06
Hmgb3O54879 AC093043.1-201ENSMUST00000226700 898 ntBASIC14.68□□□□□ -0.06
Hmgb3O54879 Gm5812-201ENSMUST00000061073 957 ntBASIC14.68□□□□□ -0.06
Hmgb3O54879 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC14.68□□□□□ -0.06
Hmgb3O54879 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Hmgb3O54879 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Hmgb3O54879 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Hmgb3O54879 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC14.68□□□□□ -0.06
Hmgb3O54879 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC14.68□□□□□ -0.06
Hmgb3O54879 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Hmgb3O54879 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Hmgb3O54879 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC14.68□□□□□ -0.06
Hmgb3O54879 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Hmgb3O54879 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC14.67□□□□□ -0.06
Hmgb3O54879 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb3O54879 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb3O54879 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb3O54879 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb3O54879 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb3O54879 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb3O54879 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb3O54879 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC14.67□□□□□ -0.06
Hmgb3O54879 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb3O54879 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb3O54879 Golgb1-201ENSMUST00000023534 498 ntBASIC14.67□□□□□ -0.06
Hmgb3O54879 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb3O54879 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb3O54879 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb3O54879 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Hmgb3O54879 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Hmgb3O54879 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Hmgb3O54879 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Hmgb3O54879 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC14.67□□□□□ -0.06
Hmgb3O54879 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Hmgb3O54879 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Hmgb3O54879 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms