Protein–RNA interactions for Protein: Q9QZS0

Col4a3, Collagen alpha-3(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a3Q9QZS0 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col4a3Q9QZS0 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Col4a3Q9QZS0 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col4a3Q9QZS0 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col4a3Q9QZS0 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC19.28■□□□□ 0.68
Col4a3Q9QZS0 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC19.28■□□□□ 0.68
Col4a3Q9QZS0 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Col4a3Q9QZS0 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC19.28■□□□□ 0.68
Col4a3Q9QZS0 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col4a3Q9QZS0 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col4a3Q9QZS0 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col4a3Q9QZS0 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Col4a3Q9QZS0 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Col4a3Q9QZS0 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col4a3Q9QZS0 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col4a3Q9QZS0 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC19.27■□□□□ 0.68
Col4a3Q9QZS0 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC19.27■□□□□ 0.68
Col4a3Q9QZS0 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col4a3Q9QZS0 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col4a3Q9QZS0 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Col4a3Q9QZS0 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Col4a3Q9QZS0 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Col4a3Q9QZS0 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC19.27■□□□□ 0.67
Col4a3Q9QZS0 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
Col4a3Q9QZS0 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
Col4a3Q9QZS0 Mir8112-201ENSMUST00000184382 131 ntBASIC19.27■□□□□ 0.67
Col4a3Q9QZS0 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC19.27■□□□□ 0.67
Col4a3Q9QZS0 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col4a3Q9QZS0 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col4a3Q9QZS0 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col4a3Q9QZS0 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col4a3Q9QZS0 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Col4a3Q9QZS0 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col4a3Q9QZS0 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col4a3Q9QZS0 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Col4a3Q9QZS0 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col4a3Q9QZS0 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Col4a3Q9QZS0 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC19.26■□□□□ 0.67
Col4a3Q9QZS0 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Col4a3Q9QZS0 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col4a3Q9QZS0 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col4a3Q9QZS0 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col4a3Q9QZS0 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col4a3Q9QZS0 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col4a3Q9QZS0 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC19.25■□□□□ 0.67
Col4a3Q9QZS0 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col4a3Q9QZS0 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col4a3Q9QZS0 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col4a3Q9QZS0 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col4a3Q9QZS0 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col4a3Q9QZS0 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Col4a3Q9QZS0 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Col4a3Q9QZS0 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC19.24■□□□□ 0.67
Col4a3Q9QZS0 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
Col4a3Q9QZS0 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a3Q9QZS0 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Col4a3Q9QZS0 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC19.24■□□□□ 0.67
Col4a3Q9QZS0 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a3Q9QZS0 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a3Q9QZS0 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a3Q9QZS0 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a3Q9QZS0 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC19.24■□□□□ 0.67
Col4a3Q9QZS0 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col4a3Q9QZS0 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col4a3Q9QZS0 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col4a3Q9QZS0 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col4a3Q9QZS0 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC19.23■□□□□ 0.67
Col4a3Q9QZS0 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col4a3Q9QZS0 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col4a3Q9QZS0 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC19.23■□□□□ 0.67
Col4a3Q9QZS0 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col4a3Q9QZS0 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col4a3Q9QZS0 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC19.23■□□□□ 0.67
Col4a3Q9QZS0 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col4a3Q9QZS0 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col4a3Q9QZS0 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col4a3Q9QZS0 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col4a3Q9QZS0 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Col4a3Q9QZS0 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col4a3Q9QZS0 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Col4a3Q9QZS0 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col4a3Q9QZS0 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col4a3Q9QZS0 Gm5953-201ENSMUST00000220644 2616 ntBASIC19.22■□□□□ 0.67
Col4a3Q9QZS0 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Col4a3Q9QZS0 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col4a3Q9QZS0 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col4a3Q9QZS0 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col4a3Q9QZS0 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col4a3Q9QZS0 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col4a3Q9QZS0 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col4a3Q9QZS0 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
Col4a3Q9QZS0 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC19.21■□□□□ 0.67
Col4a3Q9QZS0 Gm9731-201ENSMUST00000209480 747 ntBASIC19.21■□□□□ 0.67
Col4a3Q9QZS0 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col4a3Q9QZS0 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col4a3Q9QZS0 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col4a3Q9QZS0 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
Col4a3Q9QZS0 Grk6-206ENSMUST00000224995 2971 ntBASIC19.2■□□□□ 0.66
Col4a3Q9QZS0 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col4a3Q9QZS0 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms