Protein–RNA interactions for Protein: Q9JIF7

Copb1, Coatomer subunit beta, mousemouse

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Copb1Q9JIF7 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Copb1Q9JIF7 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Copb1Q9JIF7 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Copb1Q9JIF7 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Copb1Q9JIF7 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC19.44■□□□□ 0.7
Copb1Q9JIF7 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Copb1Q9JIF7 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Copb1Q9JIF7 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC19.44■□□□□ 0.7
Copb1Q9JIF7 Gm7291-201ENSMUST00000199147 382 ntBASIC19.44■□□□□ 0.7
Copb1Q9JIF7 Gm6365-201ENSMUST00000054711 744 ntBASIC19.44■□□□□ 0.7
Copb1Q9JIF7 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Copb1Q9JIF7 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Copb1Q9JIF7 Gm37519-201ENSMUST00000191687 2210 ntBASIC19.44■□□□□ 0.7
Copb1Q9JIF7 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Copb1Q9JIF7 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Copb1Q9JIF7 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Copb1Q9JIF7 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Copb1Q9JIF7 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Copb1Q9JIF7 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
Copb1Q9JIF7 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Copb1Q9JIF7 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Copb1Q9JIF7 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Copb1Q9JIF7 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Copb1Q9JIF7 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Copb1Q9JIF7 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Copb1Q9JIF7 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Copb1Q9JIF7 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Copb1Q9JIF7 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Copb1Q9JIF7 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC19.43■□□□□ 0.7
Copb1Q9JIF7 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Copb1Q9JIF7 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Copb1Q9JIF7 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Copb1Q9JIF7 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC19.43■□□□□ 0.7
Copb1Q9JIF7 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Copb1Q9JIF7 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Copb1Q9JIF7 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Copb1Q9JIF7 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC19.43■□□□□ 0.7
Copb1Q9JIF7 Gm43808-201ENSMUST00000202534 2065 ntBASIC19.42■□□□□ 0.7
Copb1Q9JIF7 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Copb1Q9JIF7 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC19.42■□□□□ 0.7
Copb1Q9JIF7 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Copb1Q9JIF7 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Copb1Q9JIF7 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Copb1Q9JIF7 Gm43338-201ENSMUST00000198617 2223 ntBASIC19.42■□□□□ 0.7
Copb1Q9JIF7 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC19.42■□□□□ 0.7
Copb1Q9JIF7 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Copb1Q9JIF7 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Copb1Q9JIF7 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Copb1Q9JIF7 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC19.42■□□□□ 0.7
Copb1Q9JIF7 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Copb1Q9JIF7 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Copb1Q9JIF7 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Copb1Q9JIF7 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Copb1Q9JIF7 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC19.42■□□□□ 0.7
Copb1Q9JIF7 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Copb1Q9JIF7 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Copb1Q9JIF7 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Copb1Q9JIF7 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Copb1Q9JIF7 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC19.41■□□□□ 0.7
Copb1Q9JIF7 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Copb1Q9JIF7 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Copb1Q9JIF7 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Copb1Q9JIF7 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Copb1Q9JIF7 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Copb1Q9JIF7 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Copb1Q9JIF7 AC122335.2-201ENSMUST00000213901 6181 ntBASIC19.41■□□□□ 0.7
Copb1Q9JIF7 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Copb1Q9JIF7 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Copb1Q9JIF7 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Copb1Q9JIF7 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Copb1Q9JIF7 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Copb1Q9JIF7 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Copb1Q9JIF7 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Copb1Q9JIF7 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Copb1Q9JIF7 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Copb1Q9JIF7 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Copb1Q9JIF7 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Copb1Q9JIF7 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Copb1Q9JIF7 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Copb1Q9JIF7 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Copb1Q9JIF7 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Copb1Q9JIF7 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Copb1Q9JIF7 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Copb1Q9JIF7 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Copb1Q9JIF7 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Copb1Q9JIF7 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC19.39■□□□□ 0.7
Copb1Q9JIF7 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Copb1Q9JIF7 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Copb1Q9JIF7 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Copb1Q9JIF7 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Copb1Q9JIF7 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Copb1Q9JIF7 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Copb1Q9JIF7 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Copb1Q9JIF7 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Copb1Q9JIF7 Gm26571-201ENSMUST00000181399 666 ntBASIC19.39■□□□□ 0.69
Copb1Q9JIF7 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Copb1Q9JIF7 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Copb1Q9JIF7 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Copb1Q9JIF7 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Copb1Q9JIF7 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC19.39■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 53.3 ms