Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx56Q9D0R4 AC122335.2-201ENSMUST00000213901 6181 ntBASIC18.67■□□□□ 0.58
Ddx56Q9D0R4 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx56Q9D0R4 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx56Q9D0R4 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx56Q9D0R4 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC18.66■□□□□ 0.58
Ddx56Q9D0R4 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC18.66■□□□□ 0.58
Ddx56Q9D0R4 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx56Q9D0R4 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC18.66■□□□□ 0.58
Ddx56Q9D0R4 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC18.66■□□□□ 0.58
Ddx56Q9D0R4 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx56Q9D0R4 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx56Q9D0R4 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC18.66■□□□□ 0.58
Ddx56Q9D0R4 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx56Q9D0R4 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
Ddx56Q9D0R4 Gm21596-201ENSMUST00000178049 1316 ntBASIC18.66■□□□□ 0.58
Ddx56Q9D0R4 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx56Q9D0R4 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC18.66■□□□□ 0.58
Ddx56Q9D0R4 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx56Q9D0R4 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC18.66■□□□□ 0.58
Ddx56Q9D0R4 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx56Q9D0R4 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx56Q9D0R4 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ddx56Q9D0R4 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Ddx56Q9D0R4 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx56Q9D0R4 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx56Q9D0R4 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx56Q9D0R4 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC18.65■□□□□ 0.58
Ddx56Q9D0R4 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx56Q9D0R4 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx56Q9D0R4 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Ddx56Q9D0R4 Gm11249-201ENSMUST00000117071 859 ntBASIC18.65■□□□□ 0.58
Ddx56Q9D0R4 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Ddx56Q9D0R4 Mir2861-201ENSMUST00000175539 82 ntBASIC18.65■□□□□ 0.58
Ddx56Q9D0R4 Gm8969-201ENSMUST00000199694 526 ntBASIC18.65■□□□□ 0.58
Ddx56Q9D0R4 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx56Q9D0R4 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx56Q9D0R4 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx56Q9D0R4 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx56Q9D0R4 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx56Q9D0R4 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ddx56Q9D0R4 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Ddx56Q9D0R4 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Ddx56Q9D0R4 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ddx56Q9D0R4 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ddx56Q9D0R4 Gm45606-201ENSMUST00000209836 2795 ntBASIC18.64■□□□□ 0.57
Ddx56Q9D0R4 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ddx56Q9D0R4 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC18.64■□□□□ 0.57
Ddx56Q9D0R4 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC18.64■□□□□ 0.57
Ddx56Q9D0R4 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC18.64■□□□□ 0.57
Ddx56Q9D0R4 Gm20049-201ENSMUST00000219950 730 ntBASIC18.64■□□□□ 0.57
Ddx56Q9D0R4 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC18.64■□□□□ 0.57
Ddx56Q9D0R4 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ddx56Q9D0R4 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx56Q9D0R4 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx56Q9D0R4 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx56Q9D0R4 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx56Q9D0R4 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC18.63■□□□□ 0.57
Ddx56Q9D0R4 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx56Q9D0R4 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx56Q9D0R4 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx56Q9D0R4 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx56Q9D0R4 Gm10418-201ENSMUST00000100943 576 ntBASIC18.63■□□□□ 0.57
Ddx56Q9D0R4 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx56Q9D0R4 Gm10138-203ENSMUST00000206952 366 ntBASIC18.63■□□□□ 0.57
Ddx56Q9D0R4 Gm29791-202ENSMUST00000207888 369 ntBASIC18.63■□□□□ 0.57
Ddx56Q9D0R4 Fcho2-208ENSMUST00000224992 2964 ntBASIC18.63■□□□□ 0.57
Ddx56Q9D0R4 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx56Q9D0R4 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx56Q9D0R4 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Ddx56Q9D0R4 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx56Q9D0R4 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
Ddx56Q9D0R4 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx56Q9D0R4 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx56Q9D0R4 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx56Q9D0R4 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx56Q9D0R4 Zcchc6-207ENSMUST00000225576 2499 ntBASIC18.62■□□□□ 0.57
Ddx56Q9D0R4 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC18.62■□□□□ 0.57
Ddx56Q9D0R4 AC163280.1-201ENSMUST00000228194 1100 ntBASIC18.62■□□□□ 0.57
Ddx56Q9D0R4 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx56Q9D0R4 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx56Q9D0R4 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC18.62■□□□□ 0.57
Ddx56Q9D0R4 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx56Q9D0R4 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx56Q9D0R4 Gm37811-201ENSMUST00000192416 2601 ntBASIC18.62■□□□□ 0.57
Ddx56Q9D0R4 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx56Q9D0R4 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx56Q9D0R4 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Ddx56Q9D0R4 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx56Q9D0R4 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx56Q9D0R4 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx56Q9D0R4 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx56Q9D0R4 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC18.61■□□□□ 0.57
Ddx56Q9D0R4 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC18.61■□□□□ 0.57
Ddx56Q9D0R4 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC18.61■□□□□ 0.57
Ddx56Q9D0R4 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC18.61■□□□□ 0.57
Ddx56Q9D0R4 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx56Q9D0R4 Mir6349-201ENSMUST00000184059 97 ntBASIC18.61■□□□□ 0.57
Ddx56Q9D0R4 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx56Q9D0R4 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms