Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC24.44■■□□□ 1.5
Usp40Q8BWR4 Gm2274-201ENSMUST00000184539 609 ntBASIC24.44■■□□□ 1.5
Usp40Q8BWR4 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC24.44■■□□□ 1.5
Usp40Q8BWR4 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
Usp40Q8BWR4 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
Usp40Q8BWR4 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Usp40Q8BWR4 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Usp40Q8BWR4 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
Usp40Q8BWR4 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC24.43■■□□□ 1.5
Usp40Q8BWR4 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Usp40Q8BWR4 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Usp40Q8BWR4 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC24.43■■□□□ 1.5
Usp40Q8BWR4 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Usp40Q8BWR4 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Usp40Q8BWR4 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC24.43■■□□□ 1.5
Usp40Q8BWR4 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Usp40Q8BWR4 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC24.43■■□□□ 1.5
Usp40Q8BWR4 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC24.43■■□□□ 1.5
Usp40Q8BWR4 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Usp40Q8BWR4 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
Usp40Q8BWR4 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Usp40Q8BWR4 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Usp40Q8BWR4 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Usp40Q8BWR4 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
Usp40Q8BWR4 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Usp40Q8BWR4 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
Usp40Q8BWR4 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC24.42■■□□□ 1.5
Usp40Q8BWR4 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Usp40Q8BWR4 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Usp40Q8BWR4 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Usp40Q8BWR4 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Usp40Q8BWR4 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
Usp40Q8BWR4 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC24.42■■□□□ 1.5
Usp40Q8BWR4 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
Usp40Q8BWR4 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Usp40Q8BWR4 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
Usp40Q8BWR4 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Usp40Q8BWR4 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Usp40Q8BWR4 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
Usp40Q8BWR4 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
Usp40Q8BWR4 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
Usp40Q8BWR4 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Usp40Q8BWR4 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Usp40Q8BWR4 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC24.41■■□□□ 1.5
Usp40Q8BWR4 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Usp40Q8BWR4 Gm35558-201ENSMUST00000222675 2219 ntBASIC24.41■■□□□ 1.5
Usp40Q8BWR4 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Usp40Q8BWR4 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
Usp40Q8BWR4 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
Usp40Q8BWR4 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC24.41■■□□□ 1.5
Usp40Q8BWR4 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
Usp40Q8BWR4 Mir5130-201ENSMUST00000175160 84 ntBASIC24.41■■□□□ 1.5
Usp40Q8BWR4 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC24.41■■□□□ 1.5
Usp40Q8BWR4 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC24.41■■□□□ 1.5
Usp40Q8BWR4 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Usp40Q8BWR4 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
Usp40Q8BWR4 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
Usp40Q8BWR4 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Usp40Q8BWR4 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
Usp40Q8BWR4 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Usp40Q8BWR4 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Usp40Q8BWR4 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Usp40Q8BWR4 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Usp40Q8BWR4 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Usp40Q8BWR4 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
Usp40Q8BWR4 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Usp40Q8BWR4 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Usp40Q8BWR4 Gm7791-201ENSMUST00000219066 539 ntBASIC24.4■■□□□ 1.5
Usp40Q8BWR4 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Usp40Q8BWR4 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
Usp40Q8BWR4 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
Usp40Q8BWR4 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
Usp40Q8BWR4 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
Usp40Q8BWR4 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
Usp40Q8BWR4 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Usp40Q8BWR4 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC24.39■■□□□ 1.5
Usp40Q8BWR4 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC24.39■■□□□ 1.5
Usp40Q8BWR4 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
Usp40Q8BWR4 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
Usp40Q8BWR4 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
Usp40Q8BWR4 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Usp40Q8BWR4 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Usp40Q8BWR4 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Usp40Q8BWR4 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Usp40Q8BWR4 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
Usp40Q8BWR4 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC24.38■■□□□ 1.49
Usp40Q8BWR4 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC24.38■■□□□ 1.49
Usp40Q8BWR4 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Usp40Q8BWR4 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Usp40Q8BWR4 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Usp40Q8BWR4 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Usp40Q8BWR4 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC24.38■■□□□ 1.49
Usp40Q8BWR4 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Usp40Q8BWR4 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
Usp40Q8BWR4 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Usp40Q8BWR4 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC24.37■■□□□ 1.49
Usp40Q8BWR4 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC24.37■■□□□ 1.49
Usp40Q8BWR4 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Usp40Q8BWR4 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Usp40Q8BWR4 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms