Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Ubfd1Q78JW9 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ubfd1Q78JW9 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ubfd1Q78JW9 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ubfd1Q78JW9 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ubfd1Q78JW9 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ubfd1Q78JW9 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Ubfd1Q78JW9 Gm9694-201ENSMUST00000193347 1189 ntBASIC17.28■□□□□ 0.36
Ubfd1Q78JW9 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ubfd1Q78JW9 Gm29994-201ENSMUST00000195495 1193 ntBASIC17.28■□□□□ 0.36
Ubfd1Q78JW9 Gm38342-201ENSMUST00000195710 2980 ntBASIC17.28■□□□□ 0.36
Ubfd1Q78JW9 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC17.28■□□□□ 0.36
Ubfd1Q78JW9 Gm43799-201ENSMUST00000201845 579 ntBASIC17.28■□□□□ 0.36
Ubfd1Q78JW9 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC17.28■□□□□ 0.36
Ubfd1Q78JW9 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ubfd1Q78JW9 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ubfd1Q78JW9 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ubfd1Q78JW9 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ubfd1Q78JW9 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Ubfd1Q78JW9 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC17.28■□□□□ 0.36
Ubfd1Q78JW9 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Ubfd1Q78JW9 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Ubfd1Q78JW9 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Ubfd1Q78JW9 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Ubfd1Q78JW9 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ubfd1Q78JW9 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ubfd1Q78JW9 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ubfd1Q78JW9 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Ubfd1Q78JW9 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ubfd1Q78JW9 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC17.27■□□□□ 0.36
Ubfd1Q78JW9 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC17.27■□□□□ 0.36
Ubfd1Q78JW9 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Ubfd1Q78JW9 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Ubfd1Q78JW9 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Ubfd1Q78JW9 Gm6433-201ENSMUST00000118634 875 ntBASIC17.27■□□□□ 0.36
Ubfd1Q78JW9 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Ubfd1Q78JW9 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Ubfd1Q78JW9 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Ubfd1Q78JW9 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Ubfd1Q78JW9 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Ubfd1Q78JW9 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Ubfd1Q78JW9 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
Ubfd1Q78JW9 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
Ubfd1Q78JW9 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ubfd1Q78JW9 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ubfd1Q78JW9 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Ubfd1Q78JW9 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Ubfd1Q78JW9 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC17.26■□□□□ 0.35
Ubfd1Q78JW9 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ubfd1Q78JW9 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ubfd1Q78JW9 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Ubfd1Q78JW9 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Ubfd1Q78JW9 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ubfd1Q78JW9 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ubfd1Q78JW9 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ubfd1Q78JW9 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ubfd1Q78JW9 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ubfd1Q78JW9 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ubfd1Q78JW9 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ubfd1Q78JW9 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Ubfd1Q78JW9 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ubfd1Q78JW9 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ubfd1Q78JW9 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ubfd1Q78JW9 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC17.26■□□□□ 0.35
Ubfd1Q78JW9 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Ubfd1Q78JW9 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ubfd1Q78JW9 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ubfd1Q78JW9 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ubfd1Q78JW9 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Ubfd1Q78JW9 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ubfd1Q78JW9 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC17.25■□□□□ 0.35
Ubfd1Q78JW9 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ubfd1Q78JW9 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC17.25■□□□□ 0.35
Ubfd1Q78JW9 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC17.25■□□□□ 0.35
Ubfd1Q78JW9 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ubfd1Q78JW9 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ubfd1Q78JW9 Gm9987-201ENSMUST00000069768 567 ntBASIC17.25■□□□□ 0.35
Ubfd1Q78JW9 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ubfd1Q78JW9 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC17.25■□□□□ 0.35
Ubfd1Q78JW9 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ubfd1Q78JW9 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ubfd1Q78JW9 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Ubfd1Q78JW9 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ubfd1Q78JW9 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Ubfd1Q78JW9 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ubfd1Q78JW9 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Ubfd1Q78JW9 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Ubfd1Q78JW9 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
Ubfd1Q78JW9 Gm12085-201ENSMUST00000119263 940 ntBASIC17.24■□□□□ 0.35
Ubfd1Q78JW9 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
Ubfd1Q78JW9 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ubfd1Q78JW9 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ubfd1Q78JW9 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ubfd1Q78JW9 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Ubfd1Q78JW9 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Ubfd1Q78JW9 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ubfd1Q78JW9 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ubfd1Q78JW9 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ubfd1Q78JW9 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Ubfd1Q78JW9 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 53.9 ms