Protein–RNA interactions for Protein: Q6T3U4

Npc1l1, Niemann-Pick C1-like protein 1, mousemouse

Predictions only

Length 1,333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Npc1l1Q6T3U4 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Npc1l1Q6T3U4 AC156016.1-201ENSMUST00000227190 1035 ntBASIC21.33■■□□□ 1.01
Npc1l1Q6T3U4 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Npc1l1Q6T3U4 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Npc1l1Q6T3U4 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Npc1l1Q6T3U4 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Npc1l1Q6T3U4 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1
Npc1l1Q6T3U4 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC21.32■■□□□ 1
Npc1l1Q6T3U4 Gm11539-201ENSMUST00000119837 557 ntBASIC21.32■■□□□ 1
Npc1l1Q6T3U4 Gm13436-201ENSMUST00000120418 567 ntBASIC21.32■■□□□ 1
Npc1l1Q6T3U4 Gm13559-201ENSMUST00000120476 863 ntBASIC21.32■■□□□ 1
Npc1l1Q6T3U4 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC21.32■■□□□ 1
Npc1l1Q6T3U4 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Npc1l1Q6T3U4 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC21.32■■□□□ 1
Npc1l1Q6T3U4 Timm23-208ENSMUST00000226683 750 ntBASIC21.32■■□□□ 1
Npc1l1Q6T3U4 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC21.32■■□□□ 1
Npc1l1Q6T3U4 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Npc1l1Q6T3U4 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Npc1l1Q6T3U4 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Npc1l1Q6T3U4 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC21.32■■□□□ 1
Npc1l1Q6T3U4 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Npc1l1Q6T3U4 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Npc1l1Q6T3U4 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Npc1l1Q6T3U4 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC21.32■■□□□ 1
Npc1l1Q6T3U4 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC21.32■■□□□ 1
Npc1l1Q6T3U4 Gm5953-201ENSMUST00000220644 2616 ntBASIC21.32■■□□□ 1
Npc1l1Q6T3U4 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Npc1l1Q6T3U4 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Npc1l1Q6T3U4 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC21.31■■□□□ 1
Npc1l1Q6T3U4 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC21.31■■□□□ 1
Npc1l1Q6T3U4 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC21.31■■□□□ 1
Npc1l1Q6T3U4 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC21.31■■□□□ 1
Npc1l1Q6T3U4 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC21.31■■□□□ 1
Npc1l1Q6T3U4 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC21.31■■□□□ 1
Npc1l1Q6T3U4 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Npc1l1Q6T3U4 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Npc1l1Q6T3U4 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Npc1l1Q6T3U4 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Npc1l1Q6T3U4 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC21.31■■□□□ 1
Npc1l1Q6T3U4 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Npc1l1Q6T3U4 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Npc1l1Q6T3U4 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC21.31■■□□□ 1
Npc1l1Q6T3U4 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Npc1l1Q6T3U4 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Npc1l1Q6T3U4 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Npc1l1Q6T3U4 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Npc1l1Q6T3U4 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Npc1l1Q6T3U4 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Npc1l1Q6T3U4 Gm29791-202ENSMUST00000207888 369 ntBASIC21.3■■□□□ 1
Npc1l1Q6T3U4 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Npc1l1Q6T3U4 Otx2os1-204ENSMUST00000227221 751 ntBASIC21.3■■□□□ 1
Npc1l1Q6T3U4 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Npc1l1Q6T3U4 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC21.3■■□□□ 1
Npc1l1Q6T3U4 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC21.3■■□□□ 1
Npc1l1Q6T3U4 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Npc1l1Q6T3U4 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Npc1l1Q6T3U4 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Npc1l1Q6T3U4 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC21.3■■□□□ 1
Npc1l1Q6T3U4 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Npc1l1Q6T3U4 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Npc1l1Q6T3U4 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Npc1l1Q6T3U4 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC21.3■■□□□ 1
Npc1l1Q6T3U4 Gm7712-202ENSMUST00000222331 1510 ntBASIC21.3■■□□□ 1
Npc1l1Q6T3U4 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Npc1l1Q6T3U4 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Npc1l1Q6T3U4 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC21.29■■□□□ 1
Npc1l1Q6T3U4 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Npc1l1Q6T3U4 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Npc1l1Q6T3U4 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC21.29■■□□□ 1
Npc1l1Q6T3U4 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Npc1l1Q6T3U4 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Npc1l1Q6T3U4 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Npc1l1Q6T3U4 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC21.29■■□□□ 1
Npc1l1Q6T3U4 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Npc1l1Q6T3U4 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Npc1l1Q6T3U4 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Npc1l1Q6T3U4 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Npc1l1Q6T3U4 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Npc1l1Q6T3U4 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC21.29■■□□□ 1
Npc1l1Q6T3U4 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
Npc1l1Q6T3U4 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC21.29■■□□□ 1
Npc1l1Q6T3U4 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Npc1l1Q6T3U4 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Npc1l1Q6T3U4 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Npc1l1Q6T3U4 Gm37820-201ENSMUST00000194021 2147 ntBASIC21.28■■□□□ 1
Npc1l1Q6T3U4 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Npc1l1Q6T3U4 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Npc1l1Q6T3U4 Gm5828-201ENSMUST00000071842 1860 ntBASIC21.28■■□□□ 1
Npc1l1Q6T3U4 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Npc1l1Q6T3U4 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC21.28■■□□□ 1
Npc1l1Q6T3U4 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC21.28■■□□□ 1
Npc1l1Q6T3U4 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC21.28■■□□□ 1
Npc1l1Q6T3U4 Gm7889-201ENSMUST00000185591 958 ntBASIC21.28■■□□□ 1
Npc1l1Q6T3U4 Gm3375-201ENSMUST00000203929 796 ntBASIC21.28■■□□□ 1
Npc1l1Q6T3U4 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC21.28■■□□□ 1
Npc1l1Q6T3U4 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Npc1l1Q6T3U4 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Npc1l1Q6T3U4 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC21.27■■□□□ 1
Npc1l1Q6T3U4 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC21.27■■□□□ 1
Npc1l1Q6T3U4 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms