Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Smarca1Q6PGB8 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Smarca1Q6PGB8 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Smarca1Q6PGB8 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Smarca1Q6PGB8 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Smarca1Q6PGB8 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Smarca1Q6PGB8 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Smarca1Q6PGB8 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Smarca1Q6PGB8 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Smarca1Q6PGB8 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Smarca1Q6PGB8 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Smarca1Q6PGB8 Gm38285-201ENSMUST00000192928 922 ntBASIC19.72■□□□□ 0.75
Smarca1Q6PGB8 Dapk1-207ENSMUST00000226059 5009 ntBASIC19.72■□□□□ 0.75
Smarca1Q6PGB8 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Smarca1Q6PGB8 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Smarca1Q6PGB8 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC19.72■□□□□ 0.75
Smarca1Q6PGB8 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Smarca1Q6PGB8 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smarca1Q6PGB8 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smarca1Q6PGB8 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smarca1Q6PGB8 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smarca1Q6PGB8 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Smarca1Q6PGB8 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smarca1Q6PGB8 Gm13181-201ENSMUST00000120117 1069 ntBASIC19.71■□□□□ 0.75
Smarca1Q6PGB8 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Smarca1Q6PGB8 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC19.71■□□□□ 0.75
Smarca1Q6PGB8 Alkbh1-212ENSMUST00000185301 408 ntBASIC19.71■□□□□ 0.75
Smarca1Q6PGB8 AC154649.1-201ENSMUST00000227392 384 ntBASIC19.71■□□□□ 0.75
Smarca1Q6PGB8 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smarca1Q6PGB8 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smarca1Q6PGB8 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smarca1Q6PGB8 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smarca1Q6PGB8 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Smarca1Q6PGB8 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Smarca1Q6PGB8 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Smarca1Q6PGB8 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Smarca1Q6PGB8 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Smarca1Q6PGB8 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC19.7■□□□□ 0.74
Smarca1Q6PGB8 Gm10698-201ENSMUST00000182663 604 ntBASIC19.7■□□□□ 0.74
Smarca1Q6PGB8 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC19.7■□□□□ 0.74
Smarca1Q6PGB8 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC19.7■□□□□ 0.74
Smarca1Q6PGB8 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Smarca1Q6PGB8 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Smarca1Q6PGB8 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Smarca1Q6PGB8 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC19.7■□□□□ 0.74
Smarca1Q6PGB8 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Smarca1Q6PGB8 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Smarca1Q6PGB8 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Smarca1Q6PGB8 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Smarca1Q6PGB8 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Smarca1Q6PGB8 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Smarca1Q6PGB8 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Smarca1Q6PGB8 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Smarca1Q6PGB8 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Smarca1Q6PGB8 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Smarca1Q6PGB8 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Smarca1Q6PGB8 Gm8969-201ENSMUST00000199694 526 ntBASIC19.69■□□□□ 0.74
Smarca1Q6PGB8 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC19.69■□□□□ 0.74
Smarca1Q6PGB8 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Smarca1Q6PGB8 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Smarca1Q6PGB8 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC19.69■□□□□ 0.74
Smarca1Q6PGB8 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Smarca1Q6PGB8 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Smarca1Q6PGB8 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Smarca1Q6PGB8 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Smarca1Q6PGB8 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Smarca1Q6PGB8 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Smarca1Q6PGB8 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Smarca1Q6PGB8 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Smarca1Q6PGB8 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Smarca1Q6PGB8 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Smarca1Q6PGB8 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Smarca1Q6PGB8 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC19.68■□□□□ 0.74
Smarca1Q6PGB8 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Smarca1Q6PGB8 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Smarca1Q6PGB8 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Smarca1Q6PGB8 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Smarca1Q6PGB8 Gm37194-201ENSMUST00000193092 3031 ntBASIC19.68■□□□□ 0.74
Smarca1Q6PGB8 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Smarca1Q6PGB8 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Smarca1Q6PGB8 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Smarca1Q6PGB8 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Smarca1Q6PGB8 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Smarca1Q6PGB8 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Smarca1Q6PGB8 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Smarca1Q6PGB8 Gm6598-201ENSMUST00000202719 2615 ntBASIC19.67■□□□□ 0.74
Smarca1Q6PGB8 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Smarca1Q6PGB8 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Smarca1Q6PGB8 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC19.67■□□□□ 0.74
Smarca1Q6PGB8 Gm10138-203ENSMUST00000206952 366 ntBASIC19.67■□□□□ 0.74
Smarca1Q6PGB8 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Smarca1Q6PGB8 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Smarca1Q6PGB8 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Smarca1Q6PGB8 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Smarca1Q6PGB8 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Smarca1Q6PGB8 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Smarca1Q6PGB8 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Smarca1Q6PGB8 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Smarca1Q6PGB8 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Smarca1Q6PGB8 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms