Protein–RNA interactions for Protein: Q62231

Six1, Homeobox protein SIX1, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six1Q62231 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Six1Q62231 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Six1Q62231 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Six1Q62231 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC18.24■□□□□ 0.51
Six1Q62231 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC18.24■□□□□ 0.51
Six1Q62231 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC18.24■□□□□ 0.51
Six1Q62231 Gm29791-202ENSMUST00000207888 369 ntBASIC18.24■□□□□ 0.51
Six1Q62231 Gm44549-201ENSMUST00000208351 577 ntBASIC18.24■□□□□ 0.51
Six1Q62231 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
Six1Q62231 Gm45244-201ENSMUST00000211328 2200 ntBASIC18.24■□□□□ 0.51
Six1Q62231 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Six1Q62231 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Six1Q62231 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Six1Q62231 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Six1Q62231 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Six1Q62231 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Six1Q62231 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Six1Q62231 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Six1Q62231 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Six1Q62231 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Six1Q62231 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Six1Q62231 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Six1Q62231 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Six1Q62231 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Six1Q62231 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Six1Q62231 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Six1Q62231 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Six1Q62231 Gm18284-201ENSMUST00000172604 624 ntBASIC18.23■□□□□ 0.51
Six1Q62231 Gm26524-201ENSMUST00000192339 390 ntBASIC18.23■□□□□ 0.51
Six1Q62231 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC18.23■□□□□ 0.51
Six1Q62231 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Six1Q62231 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Six1Q62231 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Six1Q62231 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Six1Q62231 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Six1Q62231 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Six1Q62231 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Six1Q62231 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Six1Q62231 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Six1Q62231 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC18.22■□□□□ 0.51
Six1Q62231 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Six1Q62231 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Six1Q62231 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC18.22■□□□□ 0.51
Six1Q62231 Mir2861-201ENSMUST00000175539 82 ntBASIC18.22■□□□□ 0.51
Six1Q62231 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC18.22■□□□□ 0.51
Six1Q62231 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Six1Q62231 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC18.22■□□□□ 0.51
Six1Q62231 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Six1Q62231 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Six1Q62231 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Six1Q62231 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Six1Q62231 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Six1Q62231 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Six1Q62231 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Six1Q62231 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Six1Q62231 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Six1Q62231 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Six1Q62231 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Six1Q62231 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Six1Q62231 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Six1Q62231 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Six1Q62231 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Six1Q62231 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Six1Q62231 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Six1Q62231 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Six1Q62231 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.5
Six1Q62231 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Six1Q62231 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Six1Q62231 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Six1Q62231 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Six1Q62231 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Six1Q62231 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Six1Q62231 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Six1Q62231 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Six1Q62231 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC18.2■□□□□ 0.5
Six1Q62231 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Six1Q62231 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Six1Q62231 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Six1Q62231 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Six1Q62231 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Six1Q62231 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Six1Q62231 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Six1Q62231 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Six1Q62231 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC18.2■□□□□ 0.5
Six1Q62231 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Six1Q62231 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Six1Q62231 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Six1Q62231 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Six1Q62231 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Six1Q62231 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
Six1Q62231 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Six1Q62231 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Six1Q62231 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Six1Q62231 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Six1Q62231 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC18.19■□□□□ 0.5
Six1Q62231 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC18.19■□□□□ 0.5
Six1Q62231 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Six1Q62231 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC18.19■□□□□ 0.5
Six1Q62231 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Six1Q62231 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms