Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Msh3P13705 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Msh3P13705 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Msh3P13705 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Msh3P13705 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Msh3P13705 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC19.57■□□□□ 0.72
Msh3P13705 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Msh3P13705 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Msh3P13705 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Msh3P13705 Gm43702-201ENSMUST00000198772 2546 ntBASIC19.56■□□□□ 0.72
Msh3P13705 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Msh3P13705 Gm18666-201ENSMUST00000190039 958 ntBASIC19.56■□□□□ 0.72
Msh3P13705 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC19.56■□□□□ 0.72
Msh3P13705 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Msh3P13705 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Msh3P13705 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
Msh3P13705 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Msh3P13705 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Msh3P13705 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Msh3P13705 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Msh3P13705 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Msh3P13705 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Msh3P13705 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Msh3P13705 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Msh3P13705 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Msh3P13705 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Msh3P13705 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Msh3P13705 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC19.55■□□□□ 0.72
Msh3P13705 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC19.55■□□□□ 0.72
Msh3P13705 Gm44878-201ENSMUST00000205812 1295 ntBASIC19.55■□□□□ 0.72
Msh3P13705 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC19.55■□□□□ 0.72
Msh3P13705 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Msh3P13705 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Msh3P13705 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Msh3P13705 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC19.55■□□□□ 0.72
Msh3P13705 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Msh3P13705 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Msh3P13705 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Msh3P13705 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Msh3P13705 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Msh3P13705 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Msh3P13705 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC19.54■□□□□ 0.72
Msh3P13705 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Msh3P13705 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
Msh3P13705 Gm5643-201ENSMUST00000117081 966 ntBASIC19.54■□□□□ 0.72
Msh3P13705 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Msh3P13705 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Msh3P13705 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Msh3P13705 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC19.54■□□□□ 0.72
Msh3P13705 AC135637.1-201ENSMUST00000227750 365 ntBASIC19.54■□□□□ 0.72
Msh3P13705 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Msh3P13705 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
Msh3P13705 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Msh3P13705 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Msh3P13705 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Msh3P13705 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Msh3P13705 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Msh3P13705 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Msh3P13705 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Msh3P13705 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Msh3P13705 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Msh3P13705 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Msh3P13705 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
Msh3P13705 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Msh3P13705 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC19.53■□□□□ 0.72
Msh3P13705 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Msh3P13705 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
Msh3P13705 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Msh3P13705 Gm42900-201ENSMUST00000197184 2167 ntBASIC19.52■□□□□ 0.72
Msh3P13705 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Msh3P13705 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC19.52■□□□□ 0.72
Msh3P13705 Gm12669-201ENSMUST00000122162 1009 ntBASIC19.52■□□□□ 0.72
Msh3P13705 H2-K2-201ENSMUST00000174250 1049 ntBASIC19.52■□□□□ 0.72
Msh3P13705 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC19.52■□□□□ 0.72
Msh3P13705 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Msh3P13705 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
Msh3P13705 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Msh3P13705 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
Msh3P13705 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Msh3P13705 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
Msh3P13705 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
Msh3P13705 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Msh3P13705 Nrn1-203ENSMUST00000223611 1443 ntBASIC19.51■□□□□ 0.71
Msh3P13705 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC19.51■□□□□ 0.71
Msh3P13705 Gm10653-202ENSMUST00000139570 835 ntBASIC19.51■□□□□ 0.71
Msh3P13705 Gm6576-201ENSMUST00000169678 883 ntBASIC19.51■□□□□ 0.71
Msh3P13705 Gm37292-201ENSMUST00000192062 758 ntBASIC19.51■□□□□ 0.71
Msh3P13705 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Msh3P13705 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Msh3P13705 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Msh3P13705 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Msh3P13705 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Msh3P13705 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Msh3P13705 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC19.51■□□□□ 0.71
Msh3P13705 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Msh3P13705 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
Msh3P13705 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
Msh3P13705 Gm42545-201ENSMUST00000202755 922 ntBASIC19.5■□□□□ 0.71
Msh3P13705 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Msh3P13705 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms