Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Msx1P13297 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Msx1P13297 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Msx1P13297 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Msx1P13297 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Msx1P13297 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Msx1P13297 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Msx1P13297 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Msx1P13297 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Msx1P13297 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Msx1P13297 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Msx1P13297 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC16.82■□□□□ 0.28
Msx1P13297 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Msx1P13297 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Msx1P13297 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Msx1P13297 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Msx1P13297 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Msx1P13297 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Msx1P13297 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Msx1P13297 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Msx1P13297 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Msx1P13297 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Msx1P13297 Flg-201ENSMUST00000050758 1488 ntBASIC16.81■□□□□ 0.28
Msx1P13297 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Msx1P13297 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Msx1P13297 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Msx1P13297 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Msx1P13297 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Msx1P13297 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Msx1P13297 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Msx1P13297 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Msx1P13297 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Msx1P13297 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Msx1P13297 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC16.81■□□□□ 0.28
Msx1P13297 Alkbh1-212ENSMUST00000185301 408 ntBASIC16.81■□□□□ 0.28
Msx1P13297 Gm21362-201ENSMUST00000194272 928 ntBASIC16.81■□□□□ 0.28
Msx1P13297 AC175538.1-201ENSMUST00000225343 1269 ntBASIC16.81■□□□□ 0.28
Msx1P13297 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Msx1P13297 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Msx1P13297 Gm10819-201ENSMUST00000099988 561 ntBASIC16.81■□□□□ 0.28
Msx1P13297 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Msx1P13297 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Msx1P13297 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC16.81■□□□□ 0.28
Msx1P13297 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Msx1P13297 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Msx1P13297 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Msx1P13297 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Msx1P13297 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Msx1P13297 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Msx1P13297 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Msx1P13297 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Msx1P13297 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Msx1P13297 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Msx1P13297 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Msx1P13297 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Msx1P13297 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
Msx1P13297 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Msx1P13297 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Msx1P13297 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Msx1P13297 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Msx1P13297 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Msx1P13297 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Msx1P13297 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Msx1P13297 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Msx1P13297 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Msx1P13297 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Msx1P13297 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Msx1P13297 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Msx1P13297 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Msx1P13297 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC16.79■□□□□ 0.28
Msx1P13297 Wnt10b-205ENSMUST00000226846 1204 ntBASIC16.79■□□□□ 0.28
Msx1P13297 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Msx1P13297 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Msx1P13297 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Msx1P13297 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Msx1P13297 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Msx1P13297 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
Msx1P13297 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Msx1P13297 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Msx1P13297 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Msx1P13297 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Msx1P13297 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Msx1P13297 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Msx1P13297 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
Msx1P13297 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Msx1P13297 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Msx1P13297 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Msx1P13297 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Msx1P13297 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC16.78■□□□□ 0.28
Msx1P13297 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Msx1P13297 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC16.78■□□□□ 0.28
Msx1P13297 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Msx1P13297 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Msx1P13297 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC16.78■□□□□ 0.28
Msx1P13297 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Msx1P13297 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Msx1P13297 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC16.78■□□□□ 0.28
Msx1P13297 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Msx1P13297 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC16.78■□□□□ 0.28
Msx1P13297 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms