Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC19.32■□□□□ 0.68
Chmp6P0C0A3 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Chmp6P0C0A3 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Chmp6P0C0A3 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Chmp6P0C0A3 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Chmp6P0C0A3 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Chmp6P0C0A3 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Chmp6P0C0A3 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Chmp6P0C0A3 Gm37856-201ENSMUST00000191634 999 ntBASIC19.32■□□□□ 0.68
Chmp6P0C0A3 AC135637.1-201ENSMUST00000227750 365 ntBASIC19.32■□□□□ 0.68
Chmp6P0C0A3 Flg-201ENSMUST00000050758 1488 ntBASIC19.32■□□□□ 0.68
Chmp6P0C0A3 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Chmp6P0C0A3 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Chmp6P0C0A3 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Chmp6P0C0A3 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Chmp6P0C0A3 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Chmp6P0C0A3 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Chmp6P0C0A3 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp6P0C0A3 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp6P0C0A3 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp6P0C0A3 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp6P0C0A3 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp6P0C0A3 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp6P0C0A3 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp6P0C0A3 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp6P0C0A3 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp6P0C0A3 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp6P0C0A3 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp6P0C0A3 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp6P0C0A3 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp6P0C0A3 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC19.31■□□□□ 0.68
Chmp6P0C0A3 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp6P0C0A3 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Chmp6P0C0A3 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp6P0C0A3 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Chmp6P0C0A3 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp6P0C0A3 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp6P0C0A3 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp6P0C0A3 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Chmp6P0C0A3 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC19.31■□□□□ 0.68
Chmp6P0C0A3 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Chmp6P0C0A3 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Chmp6P0C0A3 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Chmp6P0C0A3 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Chmp6P0C0A3 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Chmp6P0C0A3 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Chmp6P0C0A3 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC19.3■□□□□ 0.68
Chmp6P0C0A3 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
Chmp6P0C0A3 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.3■□□□□ 0.68
Chmp6P0C0A3 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Chmp6P0C0A3 Dio3-201ENSMUST00000097228 1449 ntBASIC19.3■□□□□ 0.68
Chmp6P0C0A3 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC19.3■□□□□ 0.68
Chmp6P0C0A3 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Chmp6P0C0A3 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Chmp6P0C0A3 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Chmp6P0C0A3 Gm38308-201ENSMUST00000194934 1809 ntBASIC19.3■□□□□ 0.68
Chmp6P0C0A3 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Chmp6P0C0A3 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Chmp6P0C0A3 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Chmp6P0C0A3 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Chmp6P0C0A3 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
Chmp6P0C0A3 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Chmp6P0C0A3 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Chmp6P0C0A3 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
Chmp6P0C0A3 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Chmp6P0C0A3 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Chmp6P0C0A3 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Chmp6P0C0A3 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Chmp6P0C0A3 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Chmp6P0C0A3 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Chmp6P0C0A3 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Chmp6P0C0A3 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Chmp6P0C0A3 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Chmp6P0C0A3 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Chmp6P0C0A3 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Chmp6P0C0A3 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC19.28■□□□□ 0.68
Chmp6P0C0A3 Gm44878-201ENSMUST00000205812 1295 ntBASIC19.28■□□□□ 0.68
Chmp6P0C0A3 Wnt10b-205ENSMUST00000226846 1204 ntBASIC19.28■□□□□ 0.68
Chmp6P0C0A3 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC19.28■□□□□ 0.68
Chmp6P0C0A3 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Chmp6P0C0A3 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Chmp6P0C0A3 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Chmp6P0C0A3 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Chmp6P0C0A3 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Chmp6P0C0A3 AC123834.2-201ENSMUST00000224038 2340 ntBASIC19.28■□□□□ 0.68
Chmp6P0C0A3 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Chmp6P0C0A3 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Chmp6P0C0A3 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Chmp6P0C0A3 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC19.27■□□□□ 0.68
Chmp6P0C0A3 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Chmp6P0C0A3 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Chmp6P0C0A3 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Chmp6P0C0A3 Gm20760-201ENSMUST00000179197 648 ntBASIC19.27■□□□□ 0.68
Chmp6P0C0A3 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Chmp6P0C0A3 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Chmp6P0C0A3 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Chmp6P0C0A3 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Chmp6P0C0A3 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
Chmp6P0C0A3 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
Chmp6P0C0A3 Gm43702-201ENSMUST00000198772 2546 ntBASIC19.26■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms