Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC21.29■■□□□ 1
Col3a1P08121 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col3a1P08121 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Col3a1P08121 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Col3a1P08121 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col3a1P08121 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col3a1P08121 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Col3a1P08121 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col3a1P08121 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col3a1P08121 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col3a1P08121 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC21.28■■□□□ 1
Col3a1P08121 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC21.28■■□□□ 1
Col3a1P08121 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Col3a1P08121 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC21.28■■□□□ 1
Col3a1P08121 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Col3a1P08121 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Col3a1P08121 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC21.28■■□□□ 1
Col3a1P08121 Gm21362-201ENSMUST00000194272 928 ntBASIC21.28■■□□□ 1
Col3a1P08121 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col3a1P08121 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC21.28■■□□□ 1
Col3a1P08121 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Col3a1P08121 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col3a1P08121 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Col3a1P08121 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col3a1P08121 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col3a1P08121 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col3a1P08121 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col3a1P08121 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Col3a1P08121 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC21.27■■□□□ 1
Col3a1P08121 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC21.27■■□□□ 1
Col3a1P08121 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC21.27■■□□□ 1
Col3a1P08121 Gm7370-201ENSMUST00000219471 767 ntBASIC21.27■■□□□ 1
Col3a1P08121 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
Col3a1P08121 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col3a1P08121 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Col3a1P08121 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
Col3a1P08121 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Col3a1P08121 Gm37025-201ENSMUST00000195159 829 ntBASIC21.26■□□□□ 0.99
Col3a1P08121 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col3a1P08121 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col3a1P08121 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col3a1P08121 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Col3a1P08121 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC21.26■□□□□ 0.99
Col3a1P08121 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Col3a1P08121 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col3a1P08121 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC21.26■□□□□ 0.99
Col3a1P08121 Mir5130-201ENSMUST00000175160 84 ntBASIC21.26■□□□□ 0.99
Col3a1P08121 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC21.25■□□□□ 0.99
Col3a1P08121 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col3a1P08121 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col3a1P08121 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col3a1P08121 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Col3a1P08121 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC21.25■□□□□ 0.99
Col3a1P08121 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Col3a1P08121 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col3a1P08121 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col3a1P08121 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col3a1P08121 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col3a1P08121 Gm45141-201ENSMUST00000206502 1888 ntBASIC21.24■□□□□ 0.99
Col3a1P08121 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col3a1P08121 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col3a1P08121 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col3a1P08121 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col3a1P08121 Gm17661-201ENSMUST00000170317 270 ntBASIC21.24■□□□□ 0.99
Col3a1P08121 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col3a1P08121 Idnk-204ENSMUST00000226010 1898 ntBASIC21.24■□□□□ 0.99
Col3a1P08121 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Col3a1P08121 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC21.24■□□□□ 0.99
Col3a1P08121 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Col3a1P08121 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col3a1P08121 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Col3a1P08121 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col3a1P08121 Gm23634-201ENSMUST00000175071 91 ntBASIC21.23■□□□□ 0.99
Col3a1P08121 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC21.23■□□□□ 0.99
Col3a1P08121 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC21.23■□□□□ 0.99
Col3a1P08121 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Col3a1P08121 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC21.22■□□□□ 0.99
Col3a1P08121 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col3a1P08121 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col3a1P08121 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Col3a1P08121 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC21.22■□□□□ 0.99
Col3a1P08121 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col3a1P08121 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC21.22■□□□□ 0.99
Col3a1P08121 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col3a1P08121 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col3a1P08121 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
Col3a1P08121 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Col3a1P08121 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Col3a1P08121 Gm10459-201ENSMUST00000202708 1155 ntBASIC21.21■□□□□ 0.99
Col3a1P08121 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col3a1P08121 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col3a1P08121 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col3a1P08121 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col3a1P08121 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Col3a1P08121 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col3a1P08121 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Col3a1P08121 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col3a1P08121 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col3a1P08121 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col3a1P08121 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms