Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Zc3h12c-202ENSMUST00000213645 6764 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
Hoxd3P09027 Gm37706-201ENSMUST00000195379 2765 ntBASIC5.81□□□□□ -1.48
Hoxd3P09027 Ksr2-202ENSMUST00000180430 13125 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
Hoxd3P09027 AC121844.2-201ENSMUST00000219067 2066 ntBASIC5.81□□□□□ -1.48
Hoxd3P09027 Rufy3-201ENSMUST00000031229 4049 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
Hoxd3P09027 Apobec3-202ENSMUST00000109620 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
Hoxd3P09027 Bdnf-209ENSMUST00000111050 3965 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
Hoxd3P09027 Gm15448-203ENSMUST00000108620 1828 ntTSL 5 BASIC5.81□□□□□ -1.48
Hoxd3P09027 Gm7134-201ENSMUST00000122296 2406 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 AC158986.1-201ENSMUST00000228391 3455 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Pnisr-201ENSMUST00000029911 4545 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Ptk2b-208ENSMUST00000178730 3863 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Olfr530-202ENSMUST00000216727 1958 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm15731-201ENSMUST00000146887 2195 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Wdr20-201ENSMUST00000095410 2384 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Ep400-201ENSMUST00000041558 10608 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Sla-202ENSMUST00000164163 2952 ntAPPRIS P3 TSL 5 BASIC5.8□□□□□ -1.48
Hoxd3P09027 AC115760.1-201ENSMUST00000225160 1327 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm36380-201ENSMUST00000210339 4379 ntTSL 5 BASIC5.8□□□□□ -1.48
Hoxd3P09027 Ifit3-201ENSMUST00000102825 1745 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Tgfbr1-203ENSMUST00000107725 1713 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Olfr1555-ps1-202ENSMUST00000219261 2918 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
Hoxd3P09027 Mtm1-205ENSMUST00000114617 3338 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
Hoxd3P09027 Mtm1-202ENSMUST00000033700 3316 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
Hoxd3P09027 Pcnx4-201ENSMUST00000044352 4300 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Zfp641-202ENSMUST00000169721 3673 ntAPPRIS P2 TSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Ceacam20-201ENSMUST00000094753 2888 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Dph6-202ENSMUST00000055144 2476 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Olfr1052-203ENSMUST00000217166 1694 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
Hoxd3P09027 Traj40-201ENSMUST00000103702 61 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm25614-201ENSMUST00000104013 133 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Rnf148-201ENSMUST00000104979 1239 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
Hoxd3P09027 Atp5h-203ENSMUST00000106537 682 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm14248-201ENSMUST00000117790 544 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Vmn1r-ps97-201ENSMUST00000118338 603 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm14729-201ENSMUST00000118373 689 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm14731-201ENSMUST00000119216 376 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm14128-201ENSMUST00000119514 1011 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm9005-201ENSMUST00000119908 607 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm15362-201ENSMUST00000121459 388 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm4997-201ENSMUST00000154056 360 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm16566-201ENSMUST00000160387 910 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 4931403E22Rik-201ENSMUST00000177048 668 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm21883-201ENSMUST00000179028 372 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm21789-201ENSMUST00000179547 372 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm21870-201ENSMUST00000179973 372 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm26988-201ENSMUST00000183296 945 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm28512-201ENSMUST00000187415 762 ntTSL 3 BASIC5.8□□□□□ -1.48
Hoxd3P09027 9130024F11Rik-203ENSMUST00000187858 447 ntTSL 2 BASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm28974-201ENSMUST00000187893 231 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 1700023F02Rik-202ENSMUST00000188279 412 ntTSL 2 BASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm37225-201ENSMUST00000193423 325 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm38167-201ENSMUST00000195704 1178 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm42832-201ENSMUST00000196361 745 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm17990-201ENSMUST00000211728 553 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm7943-201ENSMUST00000212078 1034 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 AC108846.2-201ENSMUST00000214925 731 ntTSL 5 BASIC5.8□□□□□ -1.48
Hoxd3P09027 4930555G07Rik-202ENSMUST00000219879 750 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm18696-201ENSMUST00000220103 274 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 AC155941.1-201ENSMUST00000220223 529 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm5791-201ENSMUST00000220840 489 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 CT010506.2-201ENSMUST00000225618 183 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 AC122459.2-201ENSMUST00000227099 638 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Ccdc150-201ENSMUST00000027128 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Olfr482-201ENSMUST00000081184 972 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm23627-201ENSMUST00000082459 107 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm22502-201ENSMUST00000082488 107 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm24149-201ENSMUST00000082757 107 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Ceacam11-201ENSMUST00000094799 1054 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Olfr1198-203ENSMUST00000215529 3413 ntAPPRIS P1 TSL 3 BASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm42973-201ENSMUST00000197913 3200 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Phc3-206ENSMUST00000129817 3019 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Zik1-201ENSMUST00000032551 4199 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Map2-202ENSMUST00000077355 5125 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Nyap2-205ENSMUST00000137862 3393 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 1700029M20Rik-203ENSMUST00000153347 2963 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 N4bp2-204ENSMUST00000201489 9055 ntAPPRIS P1 TSL 5 BASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm33027-201ENSMUST00000206093 4664 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Acox3-210ENSMUST00000202266 3501 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm16072-201ENSMUST00000119574 2377 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Afap1l2-203ENSMUST00000122359 3667 ntAPPRIS P3 TSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Pum1-203ENSMUST00000097864 4017 ntAPPRIS ALT1 TSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Ugt2b34-201ENSMUST00000031181 3051 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Ctage5-223ENSMUST00000219140 4194 ntAPPRIS ALT2 TSL 5 BASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm11516-201ENSMUST00000118450 1582 ntBASIC5.8□□□□□ -1.48
Hoxd3P09027 Nsd2-203ENSMUST00000075812 7142 ntAPPRIS P4 TSL 5 BASIC5.8□□□□□ -1.48
Hoxd3P09027 Sec22a-201ENSMUST00000043521 3992 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 4921528I07Rik-202ENSMUST00000213446 3798 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Kif24-201ENSMUST00000030148 4333 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Dock5-201ENSMUST00000039135 9988 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
Hoxd3P09027 Gm16427-202ENSMUST00000200745 1749 ntAPPRIS P5 TSL 2 BASIC5.79□□□□□ -1.48
Hoxd3P09027 Gm805-201ENSMUST00000181667 3160 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
Hoxd3P09027 Gm7265-201ENSMUST00000192735 3502 ntBASIC5.79□□□□□ -1.48
Hoxd3P09027 Smarcal1-207ENSMUST00000152225 2994 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
Hoxd3P09027 Vmn1r196-203ENSMUST00000227516 5122 ntBASIC5.79□□□□□ -1.48
Hoxd3P09027 Pvt1-202ENSMUST00000181416 3319 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
Hoxd3P09027 Gm17841-201ENSMUST00000210711 2425 ntBASIC5.79□□□□□ -1.48
Hoxd3P09027 Lpcat2b-201ENSMUST00000166599 2782 ntAPPRIS P1 TSL 3 BASIC5.79□□□□□ -1.48
Hoxd3P09027 Vmn1r51-213ENSMUST00000228880 4353 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
Hoxd3P09027 Cxcr6-201ENSMUST00000049810 1897 ntAPPRIS P2 TSL 1 (best) BASIC5.79□□□□□ -1.48
Retrieved 100 of 76,532 protein–RNA pairs in 72.5 ms