Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC24.68■■□□□ 1.54
Scn4aQ9ER60 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Scn4aQ9ER60 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC24.68■■□□□ 1.54
Scn4aQ9ER60 Gm5186-201ENSMUST00000218781 920 ntBASIC24.68■■□□□ 1.54
Scn4aQ9ER60 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Scn4aQ9ER60 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
Scn4aQ9ER60 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC24.68■■□□□ 1.54
Scn4aQ9ER60 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC24.68■■□□□ 1.54
Scn4aQ9ER60 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Scn4aQ9ER60 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC24.68■■□□□ 1.54
Scn4aQ9ER60 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC24.68■■□□□ 1.54
Scn4aQ9ER60 Gm12350-201ENSMUST00000121208 462 ntBASIC24.68■■□□□ 1.54
Scn4aQ9ER60 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Scn4aQ9ER60 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC24.67■■□□□ 1.54
Scn4aQ9ER60 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Scn4aQ9ER60 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
Scn4aQ9ER60 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Scn4aQ9ER60 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Scn4aQ9ER60 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC24.67■■□□□ 1.54
Scn4aQ9ER60 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Scn4aQ9ER60 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC24.66■■□□□ 1.54
Scn4aQ9ER60 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
Scn4aQ9ER60 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC24.66■■□□□ 1.54
Scn4aQ9ER60 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
Scn4aQ9ER60 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC24.66■■□□□ 1.54
Scn4aQ9ER60 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC24.66■■□□□ 1.54
Scn4aQ9ER60 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
Scn4aQ9ER60 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Scn4aQ9ER60 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC24.65■■□□□ 1.54
Scn4aQ9ER60 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC24.65■■□□□ 1.54
Scn4aQ9ER60 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
Scn4aQ9ER60 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Scn4aQ9ER60 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
Scn4aQ9ER60 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Scn4aQ9ER60 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Scn4aQ9ER60 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC24.65■■□□□ 1.54
Scn4aQ9ER60 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC24.65■■□□□ 1.54
Scn4aQ9ER60 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC24.65■■□□□ 1.54
Scn4aQ9ER60 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Scn4aQ9ER60 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC24.65■■□□□ 1.54
Scn4aQ9ER60 Gm32996-201ENSMUST00000199828 1447 ntBASIC24.64■■□□□ 1.54
Scn4aQ9ER60 Gm12644-201ENSMUST00000119935 606 ntBASIC24.64■■□□□ 1.54
Scn4aQ9ER60 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Scn4aQ9ER60 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
Scn4aQ9ER60 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC24.64■■□□□ 1.54
Scn4aQ9ER60 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
Scn4aQ9ER60 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
Scn4aQ9ER60 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
Scn4aQ9ER60 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
Scn4aQ9ER60 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC24.63■■□□□ 1.53
Scn4aQ9ER60 Bloc1s5-203ENSMUST00000224902 612 ntBASIC24.63■■□□□ 1.53
Scn4aQ9ER60 AC125350.1-201ENSMUST00000225115 903 ntBASIC24.63■■□□□ 1.53
Scn4aQ9ER60 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
Scn4aQ9ER60 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
Scn4aQ9ER60 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
Scn4aQ9ER60 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
Scn4aQ9ER60 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Scn4aQ9ER60 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC24.63■■□□□ 1.53
Scn4aQ9ER60 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Scn4aQ9ER60 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC24.62■■□□□ 1.53
Scn4aQ9ER60 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
Scn4aQ9ER60 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
Scn4aQ9ER60 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Scn4aQ9ER60 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC24.62■■□□□ 1.53
Scn4aQ9ER60 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC24.62■■□□□ 1.53
Scn4aQ9ER60 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC24.62■■□□□ 1.53
Scn4aQ9ER60 AC120002.2-201ENSMUST00000220205 773 ntBASIC24.62■■□□□ 1.53
Scn4aQ9ER60 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Scn4aQ9ER60 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
Scn4aQ9ER60 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Scn4aQ9ER60 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Scn4aQ9ER60 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
Scn4aQ9ER60 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC24.61■■□□□ 1.53
Scn4aQ9ER60 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
Scn4aQ9ER60 Gm42670-201ENSMUST00000201816 1292 ntBASIC24.61■■□□□ 1.53
Scn4aQ9ER60 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Scn4aQ9ER60 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC24.61■■□□□ 1.53
Scn4aQ9ER60 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Scn4aQ9ER60 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC24.61■■□□□ 1.53
Scn4aQ9ER60 Gm14822-201ENSMUST00000122247 291 ntBASIC24.61■■□□□ 1.53
Scn4aQ9ER60 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Scn4aQ9ER60 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Scn4aQ9ER60 Gm38345-201ENSMUST00000192635 1748 ntBASIC24.6■■□□□ 1.53
Scn4aQ9ER60 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
Scn4aQ9ER60 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC24.6■■□□□ 1.53
Scn4aQ9ER60 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC24.6■■□□□ 1.53
Scn4aQ9ER60 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC24.6■■□□□ 1.53
Scn4aQ9ER60 Cmtm5-203ENSMUST00000227441 610 ntBASIC24.6■■□□□ 1.53
Scn4aQ9ER60 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Scn4aQ9ER60 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Scn4aQ9ER60 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Scn4aQ9ER60 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Scn4aQ9ER60 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC24.59■■□□□ 1.53
Scn4aQ9ER60 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Scn4aQ9ER60 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
Scn4aQ9ER60 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Scn4aQ9ER60 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC24.58■■□□□ 1.53
Scn4aQ9ER60 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Scn4aQ9ER60 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
Scn4aQ9ER60 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC24.58■■□□□ 1.53
Retrieved 100 of 76,532 protein–RNA pairs in 44.1 ms