Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Smarca1Q6PGB8 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Smarca1Q6PGB8 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Smarca1Q6PGB8 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Smarca1Q6PGB8 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Smarca1Q6PGB8 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Smarca1Q6PGB8 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Smarca1Q6PGB8 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC19.8■□□□□ 0.76
Smarca1Q6PGB8 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
Smarca1Q6PGB8 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Smarca1Q6PGB8 Gm10252-201ENSMUST00000209541 832 ntBASIC19.8■□□□□ 0.76
Smarca1Q6PGB8 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC19.8■□□□□ 0.76
Smarca1Q6PGB8 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Smarca1Q6PGB8 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Smarca1Q6PGB8 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC19.8■□□□□ 0.76
Smarca1Q6PGB8 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC19.8■□□□□ 0.76
Smarca1Q6PGB8 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Smarca1Q6PGB8 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Smarca1Q6PGB8 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Smarca1Q6PGB8 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Smarca1Q6PGB8 Nrn1-203ENSMUST00000223611 1443 ntBASIC19.79■□□□□ 0.76
Smarca1Q6PGB8 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
Smarca1Q6PGB8 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC19.79■□□□□ 0.76
Smarca1Q6PGB8 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC19.79■□□□□ 0.76
Smarca1Q6PGB8 AC163280.1-201ENSMUST00000228194 1100 ntBASIC19.79■□□□□ 0.76
Smarca1Q6PGB8 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Smarca1Q6PGB8 Gm19439-201ENSMUST00000198195 2273 ntBASIC19.79■□□□□ 0.76
Smarca1Q6PGB8 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Smarca1Q6PGB8 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Smarca1Q6PGB8 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Smarca1Q6PGB8 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Smarca1Q6PGB8 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Smarca1Q6PGB8 Zfp783-201ENSMUST00000095946 670 ntBASIC19.78■□□□□ 0.76
Smarca1Q6PGB8 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Smarca1Q6PGB8 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC19.78■□□□□ 0.76
Smarca1Q6PGB8 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC19.78■□□□□ 0.76
Smarca1Q6PGB8 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Smarca1Q6PGB8 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Smarca1Q6PGB8 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Smarca1Q6PGB8 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Smarca1Q6PGB8 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Smarca1Q6PGB8 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Smarca1Q6PGB8 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Smarca1Q6PGB8 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Smarca1Q6PGB8 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Smarca1Q6PGB8 H2-K2-201ENSMUST00000174250 1049 ntBASIC19.77■□□□□ 0.76
Smarca1Q6PGB8 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Smarca1Q6PGB8 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Smarca1Q6PGB8 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Smarca1Q6PGB8 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Smarca1Q6PGB8 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC19.77■□□□□ 0.75
Smarca1Q6PGB8 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Smarca1Q6PGB8 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Smarca1Q6PGB8 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Smarca1Q6PGB8 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Smarca1Q6PGB8 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Smarca1Q6PGB8 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Smarca1Q6PGB8 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Smarca1Q6PGB8 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC19.76■□□□□ 0.75
Smarca1Q6PGB8 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Smarca1Q6PGB8 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Smarca1Q6PGB8 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
Smarca1Q6PGB8 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
Smarca1Q6PGB8 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Smarca1Q6PGB8 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Smarca1Q6PGB8 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Smarca1Q6PGB8 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC19.76■□□□□ 0.75
Smarca1Q6PGB8 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Smarca1Q6PGB8 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Smarca1Q6PGB8 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Smarca1Q6PGB8 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Smarca1Q6PGB8 Gm15378-201ENSMUST00000121894 207 ntBASIC19.75■□□□□ 0.75
Smarca1Q6PGB8 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Smarca1Q6PGB8 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Smarca1Q6PGB8 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Smarca1Q6PGB8 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Smarca1Q6PGB8 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Smarca1Q6PGB8 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Smarca1Q6PGB8 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Smarca1Q6PGB8 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Smarca1Q6PGB8 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Smarca1Q6PGB8 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Smarca1Q6PGB8 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Smarca1Q6PGB8 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
Smarca1Q6PGB8 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Smarca1Q6PGB8 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC19.74■□□□□ 0.75
Smarca1Q6PGB8 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Smarca1Q6PGB8 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Smarca1Q6PGB8 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Smarca1Q6PGB8 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Smarca1Q6PGB8 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Smarca1Q6PGB8 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Smarca1Q6PGB8 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC19.74■□□□□ 0.75
Smarca1Q6PGB8 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Smarca1Q6PGB8 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Smarca1Q6PGB8 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Smarca1Q6PGB8 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Smarca1Q6PGB8 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC19.73■□□□□ 0.75
Smarca1Q6PGB8 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Smarca1Q6PGB8 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms