Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC17.32■□□□□ 0.36
Col27a1Q5QNQ9 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Col27a1Q5QNQ9 AC120002.2-201ENSMUST00000220205 773 ntBASIC17.32■□□□□ 0.36
Col27a1Q5QNQ9 AC159301.1-201ENSMUST00000225130 1182 ntBASIC17.32■□□□□ 0.36
Col27a1Q5QNQ9 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Col27a1Q5QNQ9 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Col27a1Q5QNQ9 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col27a1Q5QNQ9 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col27a1Q5QNQ9 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col27a1Q5QNQ9 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Col27a1Q5QNQ9 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col27a1Q5QNQ9 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col27a1Q5QNQ9 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC17.31■□□□□ 0.36
Col27a1Q5QNQ9 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Col27a1Q5QNQ9 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col27a1Q5QNQ9 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC17.31■□□□□ 0.36
Col27a1Q5QNQ9 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col27a1Q5QNQ9 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Col27a1Q5QNQ9 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col27a1Q5QNQ9 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Col27a1Q5QNQ9 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC17.31■□□□□ 0.36
Col27a1Q5QNQ9 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col27a1Q5QNQ9 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col27a1Q5QNQ9 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col27a1Q5QNQ9 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col27a1Q5QNQ9 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col27a1Q5QNQ9 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Col27a1Q5QNQ9 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col27a1Q5QNQ9 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col27a1Q5QNQ9 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col27a1Q5QNQ9 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col27a1Q5QNQ9 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col27a1Q5QNQ9 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col27a1Q5QNQ9 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
Col27a1Q5QNQ9 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Col27a1Q5QNQ9 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Col27a1Q5QNQ9 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC17.29■□□□□ 0.36
Col27a1Q5QNQ9 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col27a1Q5QNQ9 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC17.29■□□□□ 0.36
Col27a1Q5QNQ9 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col27a1Q5QNQ9 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Col27a1Q5QNQ9 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col27a1Q5QNQ9 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col27a1Q5QNQ9 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Col27a1Q5QNQ9 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Col27a1Q5QNQ9 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col27a1Q5QNQ9 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col27a1Q5QNQ9 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Col27a1Q5QNQ9 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Col27a1Q5QNQ9 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC17.28■□□□□ 0.36
Col27a1Q5QNQ9 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Col27a1Q5QNQ9 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC17.28■□□□□ 0.36
Col27a1Q5QNQ9 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC17.28■□□□□ 0.36
Col27a1Q5QNQ9 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col27a1Q5QNQ9 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Col27a1Q5QNQ9 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col27a1Q5QNQ9 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC17.28■□□□□ 0.36
Col27a1Q5QNQ9 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC17.28■□□□□ 0.36
Col27a1Q5QNQ9 Gm2651-201ENSMUST00000203560 838 ntBASIC17.28■□□□□ 0.36
Col27a1Q5QNQ9 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col27a1Q5QNQ9 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC17.28■□□□□ 0.36
Col27a1Q5QNQ9 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col27a1Q5QNQ9 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col27a1Q5QNQ9 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Col27a1Q5QNQ9 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col27a1Q5QNQ9 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC17.27■□□□□ 0.36
Col27a1Q5QNQ9 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col27a1Q5QNQ9 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col27a1Q5QNQ9 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col27a1Q5QNQ9 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Col27a1Q5QNQ9 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Col27a1Q5QNQ9 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Col27a1Q5QNQ9 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Col27a1Q5QNQ9 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC17.27■□□□□ 0.36
Col27a1Q5QNQ9 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col27a1Q5QNQ9 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Col27a1Q5QNQ9 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC17.27■□□□□ 0.36
Col27a1Q5QNQ9 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC17.27■□□□□ 0.36
Col27a1Q5QNQ9 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col27a1Q5QNQ9 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Col27a1Q5QNQ9 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Col27a1Q5QNQ9 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Col27a1Q5QNQ9 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
Col27a1Q5QNQ9 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Col27a1Q5QNQ9 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.35
Col27a1Q5QNQ9 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC17.27■□□□□ 0.35
Col27a1Q5QNQ9 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Col27a1Q5QNQ9 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Col27a1Q5QNQ9 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col27a1Q5QNQ9 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Col27a1Q5QNQ9 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC17.26■□□□□ 0.35
Col27a1Q5QNQ9 AC125350.1-201ENSMUST00000225115 903 ntBASIC17.26■□□□□ 0.35
Col27a1Q5QNQ9 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col27a1Q5QNQ9 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col27a1Q5QNQ9 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col27a1Q5QNQ9 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col27a1Q5QNQ9 Gm20634-201ENSMUST00000090779 2956 ntBASIC17.26■□□□□ 0.35
Col27a1Q5QNQ9 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col27a1Q5QNQ9 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC17.26■□□□□ 0.35
Col27a1Q5QNQ9 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC17.26■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 67.4 ms