Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3aQ3ULJ3 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3aQ3ULJ3 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
Upf3aQ3ULJ3 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Upf3aQ3ULJ3 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Upf3aQ3ULJ3 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC18.76■□□□□ 0.59
Upf3aQ3ULJ3 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.76■□□□□ 0.59
Upf3aQ3ULJ3 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3aQ3ULJ3 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3aQ3ULJ3 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3aQ3ULJ3 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3aQ3ULJ3 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3aQ3ULJ3 Gm4217-201ENSMUST00000182243 1002 ntBASIC18.76■□□□□ 0.59
Upf3aQ3ULJ3 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC18.76■□□□□ 0.59
Upf3aQ3ULJ3 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3aQ3ULJ3 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3aQ3ULJ3 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3aQ3ULJ3 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3aQ3ULJ3 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf3aQ3ULJ3 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Upf3aQ3ULJ3 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3aQ3ULJ3 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3aQ3ULJ3 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3aQ3ULJ3 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Upf3aQ3ULJ3 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3aQ3ULJ3 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC18.75■□□□□ 0.59
Upf3aQ3ULJ3 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC18.75■□□□□ 0.59
Upf3aQ3ULJ3 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3aQ3ULJ3 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC18.75■□□□□ 0.59
Upf3aQ3ULJ3 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3aQ3ULJ3 Gm18101-201ENSMUST00000215769 548 ntBASIC18.75■□□□□ 0.59
Upf3aQ3ULJ3 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3aQ3ULJ3 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3aQ3ULJ3 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Upf3aQ3ULJ3 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Upf3aQ3ULJ3 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC18.75■□□□□ 0.59
Upf3aQ3ULJ3 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf3aQ3ULJ3 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf3aQ3ULJ3 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf3aQ3ULJ3 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf3aQ3ULJ3 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf3aQ3ULJ3 Gm10418-201ENSMUST00000100943 576 ntBASIC18.74■□□□□ 0.59
Upf3aQ3ULJ3 Gm22697-201ENSMUST00000175194 63 ntBASIC18.74■□□□□ 0.59
Upf3aQ3ULJ3 Gm33142-201ENSMUST00000193913 867 ntBASIC18.74■□□□□ 0.59
Upf3aQ3ULJ3 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC18.74■□□□□ 0.59
Upf3aQ3ULJ3 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC18.74■□□□□ 0.59
Upf3aQ3ULJ3 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf3aQ3ULJ3 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC18.74■□□□□ 0.59
Upf3aQ3ULJ3 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Upf3aQ3ULJ3 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Upf3aQ3ULJ3 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Upf3aQ3ULJ3 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC18.73■□□□□ 0.59
Upf3aQ3ULJ3 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Upf3aQ3ULJ3 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Upf3aQ3ULJ3 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Upf3aQ3ULJ3 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC18.73■□□□□ 0.59
Upf3aQ3ULJ3 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC18.73■□□□□ 0.59
Upf3aQ3ULJ3 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Upf3aQ3ULJ3 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC18.73■□□□□ 0.59
Upf3aQ3ULJ3 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
Upf3aQ3ULJ3 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Upf3aQ3ULJ3 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Upf3aQ3ULJ3 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Upf3aQ3ULJ3 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Upf3aQ3ULJ3 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Upf3aQ3ULJ3 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Upf3aQ3ULJ3 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Upf3aQ3ULJ3 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Upf3aQ3ULJ3 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Upf3aQ3ULJ3 Gm43545-201ENSMUST00000196765 2779 ntBASIC18.72■□□□□ 0.59
Upf3aQ3ULJ3 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Upf3aQ3ULJ3 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC18.72■□□□□ 0.59
Upf3aQ3ULJ3 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Upf3aQ3ULJ3 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Upf3aQ3ULJ3 Gm13401-201ENSMUST00000117074 291 ntBASIC18.72■□□□□ 0.59
Upf3aQ3ULJ3 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Upf3aQ3ULJ3 Gm24841-201ENSMUST00000158676 357 ntBASIC18.72■□□□□ 0.59
Upf3aQ3ULJ3 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Upf3aQ3ULJ3 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Upf3aQ3ULJ3 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Upf3aQ3ULJ3 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Upf3aQ3ULJ3 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Upf3aQ3ULJ3 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC18.72■□□□□ 0.59
Upf3aQ3ULJ3 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Upf3aQ3ULJ3 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Upf3aQ3ULJ3 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Upf3aQ3ULJ3 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Upf3aQ3ULJ3 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC18.71■□□□□ 0.59
Upf3aQ3ULJ3 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Upf3aQ3ULJ3 Gm37820-201ENSMUST00000194021 2147 ntBASIC18.71■□□□□ 0.59
Upf3aQ3ULJ3 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
Upf3aQ3ULJ3 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Upf3aQ3ULJ3 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Upf3aQ3ULJ3 Gm42922-201ENSMUST00000195887 2078 ntBASIC18.71■□□□□ 0.59
Upf3aQ3ULJ3 Gm7638-201ENSMUST00000121348 967 ntBASIC18.71■□□□□ 0.59
Upf3aQ3ULJ3 Gm16061-201ENSMUST00000122167 857 ntBASIC18.71■□□□□ 0.59
Upf3aQ3ULJ3 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Upf3aQ3ULJ3 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Upf3aQ3ULJ3 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Upf3aQ3ULJ3 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC18.71■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms