Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Shmt1P50431 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Shmt1P50431 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Shmt1P50431 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Shmt1P50431 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Shmt1P50431 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Shmt1P50431 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Shmt1P50431 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Shmt1P50431 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Shmt1P50431 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Shmt1P50431 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC18.84■□□□□ 0.61
Shmt1P50431 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Shmt1P50431 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Shmt1P50431 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Shmt1P50431 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Shmt1P50431 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Shmt1P50431 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Shmt1P50431 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Shmt1P50431 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Shmt1P50431 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Shmt1P50431 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Shmt1P50431 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Shmt1P50431 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Shmt1P50431 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Shmt1P50431 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Shmt1P50431 Gm715-201ENSMUST00000117865 831 ntBASIC18.83■□□□□ 0.6
Shmt1P50431 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Shmt1P50431 AL672049.1-201ENSMUST00000197943 91 ntBASIC18.83■□□□□ 0.6
Shmt1P50431 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Shmt1P50431 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Shmt1P50431 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Shmt1P50431 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Shmt1P50431 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Shmt1P50431 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Shmt1P50431 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC18.82■□□□□ 0.6
Shmt1P50431 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Shmt1P50431 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Shmt1P50431 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
Shmt1P50431 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Shmt1P50431 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Shmt1P50431 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Shmt1P50431 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC18.82■□□□□ 0.6
Shmt1P50431 AC158538.1-201ENSMUST00000225870 294 ntBASIC18.82■□□□□ 0.6
Shmt1P50431 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Shmt1P50431 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Shmt1P50431 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Shmt1P50431 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Shmt1P50431 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Shmt1P50431 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Shmt1P50431 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Shmt1P50431 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Shmt1P50431 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Shmt1P50431 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Shmt1P50431 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Shmt1P50431 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Shmt1P50431 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Shmt1P50431 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Shmt1P50431 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Shmt1P50431 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Shmt1P50431 Gm12382-201ENSMUST00000122005 922 ntBASIC18.81■□□□□ 0.6
Shmt1P50431 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Shmt1P50431 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC18.81■□□□□ 0.6
Shmt1P50431 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC18.81■□□□□ 0.6
Shmt1P50431 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Shmt1P50431 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Shmt1P50431 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Shmt1P50431 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Shmt1P50431 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Shmt1P50431 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Shmt1P50431 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Shmt1P50431 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Shmt1P50431 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Shmt1P50431 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
Shmt1P50431 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Shmt1P50431 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Shmt1P50431 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Shmt1P50431 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Shmt1P50431 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Shmt1P50431 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Shmt1P50431 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Shmt1P50431 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Shmt1P50431 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Shmt1P50431 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC18.8■□□□□ 0.6
Shmt1P50431 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Shmt1P50431 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC18.8■□□□□ 0.6
Shmt1P50431 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Shmt1P50431 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Shmt1P50431 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Shmt1P50431 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Shmt1P50431 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC18.8■□□□□ 0.6
Shmt1P50431 AC124581.1-201ENSMUST00000225416 1399 ntBASIC18.8■□□□□ 0.6
Shmt1P50431 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Shmt1P50431 Gm45141-201ENSMUST00000206502 1888 ntBASIC18.8■□□□□ 0.6
Shmt1P50431 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Shmt1P50431 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Shmt1P50431 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Shmt1P50431 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Shmt1P50431 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Shmt1P50431 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Shmt1P50431 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 55.5 ms