Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hoxd3P09027 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Hoxd3P09027 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Hoxd3P09027 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC13.82□□□□□ -0.2
Hoxd3P09027 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC13.82□□□□□ -0.2
Hoxd3P09027 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Hoxd3P09027 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Hoxd3P09027 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hoxd3P09027 Fam105a-203ENSMUST00000226170 3043 ntBASIC13.82□□□□□ -0.2
Hoxd3P09027 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hoxd3P09027 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hoxd3P09027 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Hoxd3P09027 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC13.82□□□□□ -0.2
Hoxd3P09027 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC13.82□□□□□ -0.2
Hoxd3P09027 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hoxd3P09027 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Hoxd3P09027 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hoxd3P09027 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hoxd3P09027 Gm42922-201ENSMUST00000195887 2078 ntBASIC13.82□□□□□ -0.2
Hoxd3P09027 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hoxd3P09027 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Hoxd3P09027 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Hoxd3P09027 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Hoxd3P09027 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Hoxd3P09027 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxd3P09027 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxd3P09027 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC13.81□□□□□ -0.2
Hoxd3P09027 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxd3P09027 AC121961.1-201ENSMUST00000218594 1779 ntBASIC13.81□□□□□ -0.2
Hoxd3P09027 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxd3P09027 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxd3P09027 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC13.81□□□□□ -0.2
Hoxd3P09027 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC13.81□□□□□ -0.2
Hoxd3P09027 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC13.81□□□□□ -0.2
Hoxd3P09027 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC13.81□□□□□ -0.2
Hoxd3P09027 Gm715-201ENSMUST00000117865 831 ntBASIC13.81□□□□□ -0.2
Hoxd3P09027 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxd3P09027 Gm43183-201ENSMUST00000200632 547 ntBASIC13.81□□□□□ -0.2
Hoxd3P09027 Gm42545-201ENSMUST00000202755 922 ntBASIC13.81□□□□□ -0.2
Hoxd3P09027 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxd3P09027 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Hoxd3P09027 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxd3P09027 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Hoxd3P09027 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxd3P09027 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxd3P09027 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxd3P09027 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Hoxd3P09027 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Hoxd3P09027 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd3P09027 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd3P09027 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd3P09027 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd3P09027 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd3P09027 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd3P09027 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd3P09027 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
Hoxd3P09027 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd3P09027 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC13.8□□□□□ -0.2
Hoxd3P09027 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd3P09027 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd3P09027 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC13.8□□□□□ -0.2
Hoxd3P09027 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC13.8□□□□□ -0.2
Hoxd3P09027 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC13.8□□□□□ -0.2
Hoxd3P09027 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd3P09027 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd3P09027 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd3P09027 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd3P09027 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd3P09027 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd3P09027 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Hoxd3P09027 Gm38308-201ENSMUST00000194934 1809 ntBASIC13.8□□□□□ -0.2
Hoxd3P09027 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Hoxd3P09027 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC13.8□□□□□ -0.2
Hoxd3P09027 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Hoxd3P09027 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Hoxd3P09027 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd3P09027 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Hoxd3P09027 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd3P09027 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Hoxd3P09027 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd3P09027 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd3P09027 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd3P09027 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
Hoxd3P09027 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC13.79□□□□□ -0.2
Hoxd3P09027 Gm29019-202ENSMUST00000188623 564 ntTSL 2 BASIC13.79□□□□□ -0.2
Hoxd3P09027 Gm29241-201ENSMUST00000189260 1096 ntBASIC13.79□□□□□ -0.2
Hoxd3P09027 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd3P09027 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd3P09027 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC13.79□□□□□ -0.2
Hoxd3P09027 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC13.79□□□□□ -0.2
Hoxd3P09027 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd3P09027 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Hoxd3P09027 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Hoxd3P09027 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd3P09027 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC13.79□□□□□ -0.2
Hoxd3P09027 AC124581.1-201ENSMUST00000225416 1399 ntBASIC13.79□□□□□ -0.2
Hoxd3P09027 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd3P09027 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Hoxd3P09027 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
Hoxd3P09027 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 42.4 ms