Protein–RNA interactions for Protein: O88834

Shd, SH2 domain-containing adapter protein D, mousemouse

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShdO88834 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ShdO88834 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
ShdO88834 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ShdO88834 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
ShdO88834 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ShdO88834 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
ShdO88834 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ShdO88834 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
ShdO88834 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC18.19■□□□□ 0.5
ShdO88834 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC18.19■□□□□ 0.5
ShdO88834 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
ShdO88834 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ShdO88834 Gm37194-201ENSMUST00000193092 3031 ntBASIC18.19■□□□□ 0.5
ShdO88834 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ShdO88834 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ShdO88834 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC18.19■□□□□ 0.5
ShdO88834 Gm11249-201ENSMUST00000117071 859 ntBASIC18.19■□□□□ 0.5
ShdO88834 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ShdO88834 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
ShdO88834 Gm10653-202ENSMUST00000139570 835 ntBASIC18.19■□□□□ 0.5
ShdO88834 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
ShdO88834 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC18.19■□□□□ 0.5
ShdO88834 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ShdO88834 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ShdO88834 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
ShdO88834 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
ShdO88834 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ShdO88834 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC18.19■□□□□ 0.5
ShdO88834 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
ShdO88834 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
ShdO88834 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
ShdO88834 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ShdO88834 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC18.18■□□□□ 0.5
ShdO88834 Gm20049-201ENSMUST00000219950 730 ntBASIC18.18■□□□□ 0.5
ShdO88834 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ShdO88834 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ShdO88834 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ShdO88834 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ShdO88834 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ShdO88834 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
ShdO88834 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ShdO88834 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
ShdO88834 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ShdO88834 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
ShdO88834 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ShdO88834 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ShdO88834 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
ShdO88834 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ShdO88834 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ShdO88834 Gm37820-201ENSMUST00000194021 2147 ntBASIC18.17■□□□□ 0.5
ShdO88834 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ShdO88834 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ShdO88834 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ShdO88834 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
ShdO88834 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC18.17■□□□□ 0.5
ShdO88834 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ShdO88834 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
ShdO88834 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ShdO88834 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ShdO88834 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ShdO88834 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ShdO88834 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ShdO88834 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ShdO88834 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
ShdO88834 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC18.16■□□□□ 0.5
ShdO88834 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC18.16■□□□□ 0.5
ShdO88834 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC18.16■□□□□ 0.5
ShdO88834 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ShdO88834 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ShdO88834 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
ShdO88834 Fcho2-208ENSMUST00000224992 2964 ntBASIC18.16■□□□□ 0.5
ShdO88834 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ShdO88834 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC18.16■□□□□ 0.5
ShdO88834 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
ShdO88834 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ShdO88834 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ShdO88834 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC18.16■□□□□ 0.5
ShdO88834 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ShdO88834 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ShdO88834 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
ShdO88834 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
ShdO88834 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
ShdO88834 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
ShdO88834 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
ShdO88834 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
ShdO88834 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
ShdO88834 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC18.15■□□□□ 0.5
ShdO88834 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
ShdO88834 Mir2861-201ENSMUST00000175539 82 ntBASIC18.15■□□□□ 0.5
ShdO88834 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
ShdO88834 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC18.15■□□□□ 0.5
ShdO88834 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ShdO88834 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ShdO88834 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ShdO88834 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
ShdO88834 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
ShdO88834 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
ShdO88834 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
ShdO88834 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
ShdO88834 AC108858.1-201ENSMUST00000228461 1498 ntBASIC18.14■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms