Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Hmgb3O54879 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Hmgb3O54879 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Hmgb3O54879 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Hmgb3O54879 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Hmgb3O54879 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Hmgb3O54879 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Hmgb3O54879 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC14.81□□□□□ -0.04
Hmgb3O54879 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Hmgb3O54879 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Hmgb3O54879 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC14.81□□□□□ -0.04
Hmgb3O54879 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Hmgb3O54879 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC14.81□□□□□ -0.04
Hmgb3O54879 Gm6598-201ENSMUST00000202719 2615 ntBASIC14.8□□□□□ -0.04
Hmgb3O54879 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Hmgb3O54879 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Hmgb3O54879 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
Hmgb3O54879 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC14.8□□□□□ -0.04
Hmgb3O54879 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Hmgb3O54879 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Hmgb3O54879 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Hmgb3O54879 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Hmgb3O54879 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Hmgb3O54879 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC14.8□□□□□ -0.04
Hmgb3O54879 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC14.8□□□□□ -0.04
Hmgb3O54879 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC14.8□□□□□ -0.04
Hmgb3O54879 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC14.8□□□□□ -0.04
Hmgb3O54879 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC14.8□□□□□ -0.04
Hmgb3O54879 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Hmgb3O54879 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Hmgb3O54879 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Hmgb3O54879 Gm45906-201ENSMUST00000208911 1430 ntBASIC14.8□□□□□ -0.04
Hmgb3O54879 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Hmgb3O54879 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Hmgb3O54879 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC14.8□□□□□ -0.04
Hmgb3O54879 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC14.8□□□□□ -0.04
Hmgb3O54879 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Hmgb3O54879 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Hmgb3O54879 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Hmgb3O54879 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Hmgb3O54879 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Hmgb3O54879 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Hmgb3O54879 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Hmgb3O54879 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Hmgb3O54879 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Hmgb3O54879 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Hmgb3O54879 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Hmgb3O54879 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Hmgb3O54879 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Hmgb3O54879 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Hmgb3O54879 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Hmgb3O54879 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Hmgb3O54879 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Hmgb3O54879 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC14.79□□□□□ -0.04
Hmgb3O54879 Gm9828-202ENSMUST00000126622 1446 ntTSL 3 BASIC14.79□□□□□ -0.04
Hmgb3O54879 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Hmgb3O54879 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC14.79□□□□□ -0.04
Hmgb3O54879 Gm43294-201ENSMUST00000202850 2490 ntBASIC14.79□□□□□ -0.04
Hmgb3O54879 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Hmgb3O54879 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Hmgb3O54879 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Hmgb3O54879 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Hmgb3O54879 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Hmgb3O54879 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Hmgb3O54879 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Hmgb3O54879 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Hmgb3O54879 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Hmgb3O54879 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Hmgb3O54879 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Hmgb3O54879 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Hmgb3O54879 Gm9959-201ENSMUST00000068277 390 ntBASIC14.78□□□□□ -0.04
Hmgb3O54879 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Hmgb3O54879 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Hmgb3O54879 Gm5898-201ENSMUST00000121016 2071 ntBASIC14.78□□□□□ -0.04
Hmgb3O54879 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Hmgb3O54879 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Hmgb3O54879 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Hmgb3O54879 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Hmgb3O54879 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Hmgb3O54879 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Hmgb3O54879 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Hmgb3O54879 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Hmgb3O54879 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Hmgb3O54879 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Hmgb3O54879 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Hmgb3O54879 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Hmgb3O54879 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Hmgb3O54879 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Hmgb3O54879 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC14.77□□□□□ -0.05
Hmgb3O54879 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC14.77□□□□□ -0.05
Hmgb3O54879 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.05
Hmgb3O54879 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Hmgb3O54879 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Hmgb3O54879 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.05
Hmgb3O54879 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
Hmgb3O54879 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Hmgb3O54879 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Hmgb3O54879 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Hmgb3O54879 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Hmgb3O54879 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms