Protein–RNA interactions for Protein: B1AVK5

Col4a6, Collagen, type IV, alpha 6, mousemouse

Predictions only

Length 1,691 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a6B1AVK5 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
Col4a6B1AVK5 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col4a6B1AVK5 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Col4a6B1AVK5 Gm7213-201ENSMUST00000215977 950 ntBASIC18.47■□□□□ 0.55
Col4a6B1AVK5 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col4a6B1AVK5 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col4a6B1AVK5 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col4a6B1AVK5 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Col4a6B1AVK5 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Col4a6B1AVK5 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Col4a6B1AVK5 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Col4a6B1AVK5 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC18.46■□□□□ 0.55
Col4a6B1AVK5 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Col4a6B1AVK5 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC18.46■□□□□ 0.55
Col4a6B1AVK5 Gm27389-201ENSMUST00000183622 195 ntBASIC18.46■□□□□ 0.55
Col4a6B1AVK5 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Col4a6B1AVK5 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC18.45■□□□□ 0.54
Col4a6B1AVK5 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Col4a6B1AVK5 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Col4a6B1AVK5 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC18.45■□□□□ 0.54
Col4a6B1AVK5 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Col4a6B1AVK5 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Col4a6B1AVK5 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Col4a6B1AVK5 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Col4a6B1AVK5 Gm7153-201ENSMUST00000117092 455 ntBASIC18.44■□□□□ 0.54
Col4a6B1AVK5 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC18.44■□□□□ 0.54
Col4a6B1AVK5 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Col4a6B1AVK5 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Col4a6B1AVK5 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col4a6B1AVK5 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC18.44■□□□□ 0.54
Col4a6B1AVK5 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col4a6B1AVK5 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Col4a6B1AVK5 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col4a6B1AVK5 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col4a6B1AVK5 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col4a6B1AVK5 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Col4a6B1AVK5 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Col4a6B1AVK5 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
Col4a6B1AVK5 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Col4a6B1AVK5 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC18.44■□□□□ 0.54
Col4a6B1AVK5 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Col4a6B1AVK5 Gm18958-201ENSMUST00000174258 762 ntBASIC18.44■□□□□ 0.54
Col4a6B1AVK5 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Col4a6B1AVK5 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col4a6B1AVK5 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Col4a6B1AVK5 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Col4a6B1AVK5 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Col4a6B1AVK5 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Col4a6B1AVK5 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col4a6B1AVK5 Gm25925-201ENSMUST00000158314 306 ntBASIC18.43■□□□□ 0.54
Col4a6B1AVK5 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC18.43■□□□□ 0.54
Col4a6B1AVK5 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Col4a6B1AVK5 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC18.43■□□□□ 0.54
Col4a6B1AVK5 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col4a6B1AVK5 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col4a6B1AVK5 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC18.42■□□□□ 0.54
Col4a6B1AVK5 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col4a6B1AVK5 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Col4a6B1AVK5 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col4a6B1AVK5 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col4a6B1AVK5 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Col4a6B1AVK5 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Col4a6B1AVK5 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col4a6B1AVK5 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Col4a6B1AVK5 Gm11950-201ENSMUST00000121615 838 ntBASIC18.41■□□□□ 0.54
Col4a6B1AVK5 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col4a6B1AVK5 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col4a6B1AVK5 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col4a6B1AVK5 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col4a6B1AVK5 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col4a6B1AVK5 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col4a6B1AVK5 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Col4a6B1AVK5 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC18.41■□□□□ 0.54
Col4a6B1AVK5 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC18.41■□□□□ 0.54
Col4a6B1AVK5 Gm11860-201ENSMUST00000122346 1010 ntBASIC18.41■□□□□ 0.54
Col4a6B1AVK5 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Col4a6B1AVK5 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col4a6B1AVK5 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col4a6B1AVK5 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col4a6B1AVK5 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Col4a6B1AVK5 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col4a6B1AVK5 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Col4a6B1AVK5 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Col4a6B1AVK5 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Col4a6B1AVK5 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Col4a6B1AVK5 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col4a6B1AVK5 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col4a6B1AVK5 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Col4a6B1AVK5 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col4a6B1AVK5 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Col4a6B1AVK5 AC120002.2-201ENSMUST00000220205 773 ntBASIC18.39■□□□□ 0.53
Col4a6B1AVK5 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col4a6B1AVK5 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col4a6B1AVK5 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col4a6B1AVK5 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col4a6B1AVK5 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col4a6B1AVK5 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Col4a6B1AVK5 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col4a6B1AVK5 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Col4a6B1AVK5 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms