Protein–RNA interactions for Protein: Q9D706

Rpap3, RNA polymerase II-associated protein 3, mousemouse

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpap3Q9D706 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC19.71■□□□□ 0.75
Rpap3Q9D706 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rpap3Q9D706 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rpap3Q9D706 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rpap3Q9D706 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rpap3Q9D706 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Rpap3Q9D706 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC19.71■□□□□ 0.75
Rpap3Q9D706 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Rpap3Q9D706 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Rpap3Q9D706 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rpap3Q9D706 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rpap3Q9D706 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rpap3Q9D706 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rpap3Q9D706 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
Rpap3Q9D706 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Rpap3Q9D706 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Rpap3Q9D706 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC19.7■□□□□ 0.74
Rpap3Q9D706 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC19.7■□□□□ 0.74
Rpap3Q9D706 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
Rpap3Q9D706 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rpap3Q9D706 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
Rpap3Q9D706 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Rpap3Q9D706 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Rpap3Q9D706 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Rpap3Q9D706 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC19.69■□□□□ 0.74
Rpap3Q9D706 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Rpap3Q9D706 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC19.69■□□□□ 0.74
Rpap3Q9D706 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Rpap3Q9D706 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC19.69■□□□□ 0.74
Rpap3Q9D706 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Rpap3Q9D706 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Rpap3Q9D706 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Rpap3Q9D706 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Rpap3Q9D706 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Rpap3Q9D706 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Rpap3Q9D706 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Rpap3Q9D706 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Rpap3Q9D706 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Rpap3Q9D706 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Rpap3Q9D706 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Rpap3Q9D706 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Rpap3Q9D706 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Rpap3Q9D706 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Rpap3Q9D706 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC19.68■□□□□ 0.74
Rpap3Q9D706 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Rpap3Q9D706 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Rpap3Q9D706 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC19.68■□□□□ 0.74
Rpap3Q9D706 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Rpap3Q9D706 Gm37820-201ENSMUST00000194021 2147 ntBASIC19.68■□□□□ 0.74
Rpap3Q9D706 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Rpap3Q9D706 Gm4974-201ENSMUST00000209974 875 ntBASIC19.68■□□□□ 0.74
Rpap3Q9D706 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Rpap3Q9D706 Gm9987-201ENSMUST00000069768 567 ntBASIC19.68■□□□□ 0.74
Rpap3Q9D706 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Rpap3Q9D706 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC19.68■□□□□ 0.74
Rpap3Q9D706 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Rpap3Q9D706 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Rpap3Q9D706 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Rpap3Q9D706 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Rpap3Q9D706 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Rpap3Q9D706 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Rpap3Q9D706 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Rpap3Q9D706 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Rpap3Q9D706 Gm29791-202ENSMUST00000207888 369 ntBASIC19.67■□□□□ 0.74
Rpap3Q9D706 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Rpap3Q9D706 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Rpap3Q9D706 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC19.67■□□□□ 0.74
Rpap3Q9D706 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Rpap3Q9D706 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Rpap3Q9D706 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Rpap3Q9D706 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Rpap3Q9D706 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC19.66■□□□□ 0.74
Rpap3Q9D706 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Rpap3Q9D706 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Rpap3Q9D706 Gm7977-201ENSMUST00000193787 748 ntBASIC19.66■□□□□ 0.74
Rpap3Q9D706 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Rpap3Q9D706 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC19.66■□□□□ 0.74
Rpap3Q9D706 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Rpap3Q9D706 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Rpap3Q9D706 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
Rpap3Q9D706 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Rpap3Q9D706 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Rpap3Q9D706 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Rpap3Q9D706 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Rpap3Q9D706 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Rpap3Q9D706 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Rpap3Q9D706 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Rpap3Q9D706 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
Rpap3Q9D706 Gm13401-201ENSMUST00000117074 291 ntBASIC19.65■□□□□ 0.74
Rpap3Q9D706 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC19.65■□□□□ 0.74
Rpap3Q9D706 Gm11539-201ENSMUST00000119837 557 ntBASIC19.65■□□□□ 0.74
Rpap3Q9D706 Gm13436-201ENSMUST00000120418 567 ntBASIC19.65■□□□□ 0.74
Rpap3Q9D706 Gm13559-201ENSMUST00000120476 863 ntBASIC19.65■□□□□ 0.74
Rpap3Q9D706 Gm9694-201ENSMUST00000193347 1189 ntBASIC19.65■□□□□ 0.74
Rpap3Q9D706 Gm10616-201ENSMUST00000205285 2127 ntBASIC19.65■□□□□ 0.74
Rpap3Q9D706 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Rpap3Q9D706 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
Rpap3Q9D706 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
Rpap3Q9D706 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC19.65■□□□□ 0.74
Rpap3Q9D706 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms