Protein–RNA interactions for Protein: Q8BTF7

Lig4, DNA ligase 4, mousemouse

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig4Q8BTF7 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Lig4Q8BTF7 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Lig4Q8BTF7 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Lig4Q8BTF7 CT010444.2-201ENSMUST00000217877 1629 ntBASIC18.92■□□□□ 0.62
Lig4Q8BTF7 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC18.92■□□□□ 0.62
Lig4Q8BTF7 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Lig4Q8BTF7 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Lig4Q8BTF7 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Lig4Q8BTF7 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Lig4Q8BTF7 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Lig4Q8BTF7 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Lig4Q8BTF7 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC18.91■□□□□ 0.62
Lig4Q8BTF7 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC18.91■□□□□ 0.62
Lig4Q8BTF7 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC18.91■□□□□ 0.62
Lig4Q8BTF7 Gm43183-201ENSMUST00000200632 547 ntBASIC18.91■□□□□ 0.62
Lig4Q8BTF7 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Lig4Q8BTF7 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Lig4Q8BTF7 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Lig4Q8BTF7 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Lig4Q8BTF7 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC18.91■□□□□ 0.62
Lig4Q8BTF7 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC18.91■□□□□ 0.62
Lig4Q8BTF7 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Lig4Q8BTF7 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Lig4Q8BTF7 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC18.91■□□□□ 0.62
Lig4Q8BTF7 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Lig4Q8BTF7 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Lig4Q8BTF7 AC108858.1-201ENSMUST00000228461 1498 ntBASIC18.9■□□□□ 0.62
Lig4Q8BTF7 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Lig4Q8BTF7 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Lig4Q8BTF7 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Lig4Q8BTF7 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Lig4Q8BTF7 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Lig4Q8BTF7 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Lig4Q8BTF7 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC18.9■□□□□ 0.62
Lig4Q8BTF7 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Lig4Q8BTF7 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Lig4Q8BTF7 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Lig4Q8BTF7 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Lig4Q8BTF7 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC18.9■□□□□ 0.62
Lig4Q8BTF7 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Lig4Q8BTF7 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Lig4Q8BTF7 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Lig4Q8BTF7 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Lig4Q8BTF7 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC18.89■□□□□ 0.61
Lig4Q8BTF7 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
Lig4Q8BTF7 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Lig4Q8BTF7 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Lig4Q8BTF7 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Lig4Q8BTF7 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Lig4Q8BTF7 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Lig4Q8BTF7 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Lig4Q8BTF7 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
Lig4Q8BTF7 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC18.88■□□□□ 0.61
Lig4Q8BTF7 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
Lig4Q8BTF7 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Lig4Q8BTF7 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Lig4Q8BTF7 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Lig4Q8BTF7 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Lig4Q8BTF7 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Lig4Q8BTF7 Gm12382-201ENSMUST00000122005 922 ntBASIC18.88■□□□□ 0.61
Lig4Q8BTF7 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC18.88■□□□□ 0.61
Lig4Q8BTF7 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC18.88■□□□□ 0.61
Lig4Q8BTF7 Gm10252-201ENSMUST00000209541 832 ntBASIC18.88■□□□□ 0.61
Lig4Q8BTF7 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Lig4Q8BTF7 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Lig4Q8BTF7 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Lig4Q8BTF7 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Lig4Q8BTF7 Gm10654-201ENSMUST00000098653 1633 ntBASIC18.88■□□□□ 0.61
Lig4Q8BTF7 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Lig4Q8BTF7 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Lig4Q8BTF7 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Lig4Q8BTF7 Mir1199-201ENSMUST00000117015 119 ntBASIC18.87■□□□□ 0.61
Lig4Q8BTF7 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC18.87■□□□□ 0.61
Lig4Q8BTF7 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Lig4Q8BTF7 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Lig4Q8BTF7 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Lig4Q8BTF7 Gm37292-201ENSMUST00000192062 758 ntBASIC18.87■□□□□ 0.61
Lig4Q8BTF7 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Lig4Q8BTF7 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Lig4Q8BTF7 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Lig4Q8BTF7 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Lig4Q8BTF7 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Lig4Q8BTF7 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Lig4Q8BTF7 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Lig4Q8BTF7 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Lig4Q8BTF7 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Lig4Q8BTF7 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC18.87■□□□□ 0.61
Lig4Q8BTF7 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Lig4Q8BTF7 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Lig4Q8BTF7 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC18.86■□□□□ 0.61
Lig4Q8BTF7 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Lig4Q8BTF7 AC124581.1-201ENSMUST00000225416 1399 ntBASIC18.86■□□□□ 0.61
Lig4Q8BTF7 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
Lig4Q8BTF7 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Lig4Q8BTF7 AC166341.7-201ENSMUST00000221698 126 ntBASIC18.86■□□□□ 0.61
Lig4Q8BTF7 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Lig4Q8BTF7 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Lig4Q8BTF7 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Lig4Q8BTF7 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
Lig4Q8BTF7 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 44.6 ms