Protein–RNA interactions for Protein: Q6PFD9

Nup98, Nuclear pore complex protein Nup98-Nup96, mousemouse

Known RBP Predictions only

Length 1,816 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup98Q6PFD9 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nup98Q6PFD9 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC21.2■□□□□ 0.98
Nup98Q6PFD9 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nup98Q6PFD9 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC21.2■□□□□ 0.98
Nup98Q6PFD9 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC21.2■□□□□ 0.98
Nup98Q6PFD9 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Nup98Q6PFD9 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
Nup98Q6PFD9 AC134329.2-201ENSMUST00000217897 428 ntBASIC21.2■□□□□ 0.98
Nup98Q6PFD9 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Nup98Q6PFD9 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nup98Q6PFD9 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nup98Q6PFD9 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nup98Q6PFD9 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Nup98Q6PFD9 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Nup98Q6PFD9 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nup98Q6PFD9 Gm24841-201ENSMUST00000158676 357 ntBASIC21.19■□□□□ 0.98
Nup98Q6PFD9 Gm23634-201ENSMUST00000175071 91 ntBASIC21.19■□□□□ 0.98
Nup98Q6PFD9 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC21.19■□□□□ 0.98
Nup98Q6PFD9 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nup98Q6PFD9 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Nup98Q6PFD9 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Nup98Q6PFD9 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC21.19■□□□□ 0.98
Nup98Q6PFD9 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Nup98Q6PFD9 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nup98Q6PFD9 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nup98Q6PFD9 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nup98Q6PFD9 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nup98Q6PFD9 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nup98Q6PFD9 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nup98Q6PFD9 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Nup98Q6PFD9 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
Nup98Q6PFD9 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nup98Q6PFD9 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
Nup98Q6PFD9 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nup98Q6PFD9 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Nup98Q6PFD9 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Nup98Q6PFD9 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Nup98Q6PFD9 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Nup98Q6PFD9 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC21.18■□□□□ 0.98
Nup98Q6PFD9 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Nup98Q6PFD9 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Nup98Q6PFD9 Gm9731-201ENSMUST00000209480 747 ntBASIC21.18■□□□□ 0.98
Nup98Q6PFD9 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Nup98Q6PFD9 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Nup98Q6PFD9 Idnk-204ENSMUST00000226010 1898 ntBASIC21.17■□□□□ 0.98
Nup98Q6PFD9 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Nup98Q6PFD9 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nup98Q6PFD9 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nup98Q6PFD9 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Nup98Q6PFD9 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nup98Q6PFD9 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nup98Q6PFD9 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Nup98Q6PFD9 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Nup98Q6PFD9 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC21.17■□□□□ 0.98
Nup98Q6PFD9 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Nup98Q6PFD9 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Nup98Q6PFD9 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Nup98Q6PFD9 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Nup98Q6PFD9 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Nup98Q6PFD9 Gm7638-201ENSMUST00000121348 967 ntBASIC21.16■□□□□ 0.98
Nup98Q6PFD9 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC21.16■□□□□ 0.98
Nup98Q6PFD9 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC21.16■□□□□ 0.98
Nup98Q6PFD9 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC21.16■□□□□ 0.98
Nup98Q6PFD9 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Nup98Q6PFD9 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Nup98Q6PFD9 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Nup98Q6PFD9 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Nup98Q6PFD9 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Nup98Q6PFD9 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC21.15■□□□□ 0.98
Nup98Q6PFD9 Gm7791-201ENSMUST00000219066 539 ntBASIC21.15■□□□□ 0.98
Nup98Q6PFD9 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nup98Q6PFD9 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Nup98Q6PFD9 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nup98Q6PFD9 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Nup98Q6PFD9 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nup98Q6PFD9 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nup98Q6PFD9 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC21.15■□□□□ 0.98
Nup98Q6PFD9 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nup98Q6PFD9 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Nup98Q6PFD9 Gm16061-201ENSMUST00000122167 857 ntBASIC21.15■□□□□ 0.98
Nup98Q6PFD9 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Nup98Q6PFD9 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Nup98Q6PFD9 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nup98Q6PFD9 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Nup98Q6PFD9 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Nup98Q6PFD9 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nup98Q6PFD9 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Nup98Q6PFD9 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
Nup98Q6PFD9 Gm6345-202ENSMUST00000180900 204 ntBASIC21.14■□□□□ 0.97
Nup98Q6PFD9 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Nup98Q6PFD9 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Nup98Q6PFD9 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Nup98Q6PFD9 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nup98Q6PFD9 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nup98Q6PFD9 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Nup98Q6PFD9 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC21.13■□□□□ 0.97
Nup98Q6PFD9 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Nup98Q6PFD9 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
Nup98Q6PFD9 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Nup98Q6PFD9 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms