Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC19.66■□□□□ 0.74
CtcfQ61164 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CtcfQ61164 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CtcfQ61164 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CtcfQ61164 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CtcfQ61164 Gm10493-201ENSMUST00000097270 612 ntBASIC19.65■□□□□ 0.74
CtcfQ61164 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CtcfQ61164 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CtcfQ61164 Gm15635-204ENSMUST00000208024 2539 ntBASIC19.65■□□□□ 0.74
CtcfQ61164 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CtcfQ61164 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CtcfQ61164 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC19.65■□□□□ 0.74
CtcfQ61164 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CtcfQ61164 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CtcfQ61164 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CtcfQ61164 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CtcfQ61164 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
CtcfQ61164 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CtcfQ61164 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CtcfQ61164 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CtcfQ61164 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
CtcfQ61164 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CtcfQ61164 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CtcfQ61164 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
CtcfQ61164 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CtcfQ61164 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
CtcfQ61164 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CtcfQ61164 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CtcfQ61164 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CtcfQ61164 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
CtcfQ61164 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC19.63■□□□□ 0.73
CtcfQ61164 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CtcfQ61164 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CtcfQ61164 Gm10655-201ENSMUST00000098658 1397 ntBASIC19.63■□□□□ 0.73
CtcfQ61164 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CtcfQ61164 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CtcfQ61164 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CtcfQ61164 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC19.63■□□□□ 0.73
CtcfQ61164 Gm10033-202ENSMUST00000211874 928 ntBASIC19.63■□□□□ 0.73
CtcfQ61164 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CtcfQ61164 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CtcfQ61164 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CtcfQ61164 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CtcfQ61164 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC19.63■□□□□ 0.73
CtcfQ61164 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CtcfQ61164 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CtcfQ61164 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CtcfQ61164 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CtcfQ61164 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
CtcfQ61164 Gm38345-201ENSMUST00000192635 1748 ntBASIC19.62■□□□□ 0.73
CtcfQ61164 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CtcfQ61164 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CtcfQ61164 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CtcfQ61164 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CtcfQ61164 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC19.62■□□□□ 0.73
CtcfQ61164 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CtcfQ61164 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CtcfQ61164 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
CtcfQ61164 Gm7514-201ENSMUST00000209475 934 ntBASIC19.62■□□□□ 0.73
CtcfQ61164 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CtcfQ61164 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CtcfQ61164 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CtcfQ61164 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CtcfQ61164 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CtcfQ61164 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CtcfQ61164 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC19.62■□□□□ 0.73
CtcfQ61164 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CtcfQ61164 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC19.62■□□□□ 0.73
CtcfQ61164 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CtcfQ61164 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
CtcfQ61164 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CtcfQ61164 Gm10849-201ENSMUST00000100397 618 ntBASIC19.61■□□□□ 0.73
CtcfQ61164 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC19.61■□□□□ 0.73
CtcfQ61164 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC19.61■□□□□ 0.73
CtcfQ61164 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
CtcfQ61164 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CtcfQ61164 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CtcfQ61164 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CtcfQ61164 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CtcfQ61164 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CtcfQ61164 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CtcfQ61164 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CtcfQ61164 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC19.6■□□□□ 0.73
CtcfQ61164 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CtcfQ61164 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC19.6■□□□□ 0.73
CtcfQ61164 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC19.6■□□□□ 0.73
CtcfQ61164 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC19.6■□□□□ 0.73
CtcfQ61164 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CtcfQ61164 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CtcfQ61164 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CtcfQ61164 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CtcfQ61164 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
CtcfQ61164 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CtcfQ61164 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC19.59■□□□□ 0.73
CtcfQ61164 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CtcfQ61164 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CtcfQ61164 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CtcfQ61164 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CtcfQ61164 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CtcfQ61164 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC19.59■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms