Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Shmt1P50431 Gm29241-201ENSMUST00000189260 1096 ntBASIC18.9■□□□□ 0.62
Shmt1P50431 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC18.9■□□□□ 0.62
Shmt1P50431 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
Shmt1P50431 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC18.9■□□□□ 0.62
Shmt1P50431 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Shmt1P50431 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Shmt1P50431 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Shmt1P50431 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Shmt1P50431 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Shmt1P50431 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Shmt1P50431 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Shmt1P50431 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Shmt1P50431 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Shmt1P50431 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Shmt1P50431 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Shmt1P50431 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.62
Shmt1P50431 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Shmt1P50431 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
Shmt1P50431 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Shmt1P50431 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Shmt1P50431 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC18.89■□□□□ 0.61
Shmt1P50431 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC18.89■□□□□ 0.61
Shmt1P50431 Gm6576-201ENSMUST00000169678 883 ntBASIC18.89■□□□□ 0.61
Shmt1P50431 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC18.89■□□□□ 0.61
Shmt1P50431 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC18.89■□□□□ 0.61
Shmt1P50431 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC18.89■□□□□ 0.61
Shmt1P50431 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Shmt1P50431 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC18.89■□□□□ 0.61
Shmt1P50431 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Shmt1P50431 Grk6-206ENSMUST00000224995 2971 ntBASIC18.89■□□□□ 0.61
Shmt1P50431 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Shmt1P50431 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Shmt1P50431 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Shmt1P50431 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Shmt1P50431 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Shmt1P50431 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Shmt1P50431 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC18.88■□□□□ 0.61
Shmt1P50431 AC166341.7-201ENSMUST00000221698 126 ntBASIC18.88■□□□□ 0.61
Shmt1P50431 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Shmt1P50431 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Shmt1P50431 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Shmt1P50431 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
Shmt1P50431 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Shmt1P50431 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Shmt1P50431 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Shmt1P50431 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Shmt1P50431 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Shmt1P50431 Mir1199-201ENSMUST00000117015 119 ntBASIC18.87■□□□□ 0.61
Shmt1P50431 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Shmt1P50431 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC18.87■□□□□ 0.61
Shmt1P50431 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC18.87■□□□□ 0.61
Shmt1P50431 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC18.87■□□□□ 0.61
Shmt1P50431 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Shmt1P50431 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Shmt1P50431 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC18.87■□□□□ 0.61
Shmt1P50431 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC18.87■□□□□ 0.61
Shmt1P50431 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Shmt1P50431 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Shmt1P50431 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Shmt1P50431 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Shmt1P50431 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
Shmt1P50431 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Shmt1P50431 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Shmt1P50431 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Shmt1P50431 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Shmt1P50431 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Shmt1P50431 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Shmt1P50431 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Shmt1P50431 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Shmt1P50431 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Shmt1P50431 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Shmt1P50431 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Shmt1P50431 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Shmt1P50431 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Shmt1P50431 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Shmt1P50431 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Shmt1P50431 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
Shmt1P50431 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC18.86■□□□□ 0.61
Shmt1P50431 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC18.86■□□□□ 0.61
Shmt1P50431 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Shmt1P50431 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Shmt1P50431 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Shmt1P50431 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Shmt1P50431 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Shmt1P50431 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Shmt1P50431 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Shmt1P50431 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Shmt1P50431 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC18.85■□□□□ 0.61
Shmt1P50431 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Shmt1P50431 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Shmt1P50431 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Shmt1P50431 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Shmt1P50431 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.85■□□□□ 0.61
Shmt1P50431 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Shmt1P50431 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Shmt1P50431 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Shmt1P50431 AC175538.1-201ENSMUST00000225343 1269 ntBASIC18.85■□□□□ 0.61
Shmt1P50431 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Shmt1P50431 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 48.4 ms