Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC21.15■□□□□ 0.98
Ercc3P49135 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Ercc3P49135 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC21.15■□□□□ 0.98
Ercc3P49135 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Ercc3P49135 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ercc3P49135 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Ercc3P49135 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Ercc3P49135 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ercc3P49135 Rarb-207ENSMUST00000225921 2756 ntBASIC21.14■□□□□ 0.98
Ercc3P49135 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ercc3P49135 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ercc3P49135 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ercc3P49135 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ercc3P49135 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Ercc3P49135 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ercc3P49135 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Ercc3P49135 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC21.14■□□□□ 0.97
Ercc3P49135 Gm13158-201ENSMUST00000122007 736 ntBASIC21.14■□□□□ 0.97
Ercc3P49135 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ercc3P49135 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Ercc3P49135 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ercc3P49135 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ercc3P49135 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ercc3P49135 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC21.14■□□□□ 0.97
Ercc3P49135 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ercc3P49135 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ercc3P49135 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ercc3P49135 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ercc3P49135 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Ercc3P49135 Gm37820-201ENSMUST00000194021 2147 ntBASIC21.13■□□□□ 0.97
Ercc3P49135 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ercc3P49135 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Ercc3P49135 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ercc3P49135 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ercc3P49135 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
Ercc3P49135 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ercc3P49135 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ercc3P49135 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Ercc3P49135 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ercc3P49135 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC21.12■□□□□ 0.97
Ercc3P49135 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC21.12■□□□□ 0.97
Ercc3P49135 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ercc3P49135 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Ercc3P49135 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ercc3P49135 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Ercc3P49135 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ercc3P49135 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ercc3P49135 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
Ercc3P49135 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ercc3P49135 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ercc3P49135 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ercc3P49135 Gm8520-201ENSMUST00000186517 868 ntBASIC21.12■□□□□ 0.97
Ercc3P49135 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC21.12■□□□□ 0.97
Ercc3P49135 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC21.12■□□□□ 0.97
Ercc3P49135 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Ercc3P49135 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
Ercc3P49135 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ercc3P49135 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ercc3P49135 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC21.12■□□□□ 0.97
Ercc3P49135 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ercc3P49135 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ercc3P49135 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Ercc3P49135 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ercc3P49135 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ercc3P49135 Gm37374-201ENSMUST00000194954 1829 ntBASIC21.11■□□□□ 0.97
Ercc3P49135 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ercc3P49135 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC21.11■□□□□ 0.97
Ercc3P49135 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ercc3P49135 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Ercc3P49135 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC21.11■□□□□ 0.97
Ercc3P49135 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC21.11■□□□□ 0.97
Ercc3P49135 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC21.11■□□□□ 0.97
Ercc3P49135 Gm45560-201ENSMUST00000211492 1472 ntBASIC21.11■□□□□ 0.97
Ercc3P49135 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Ercc3P49135 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC21.11■□□□□ 0.97
Ercc3P49135 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ercc3P49135 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Ercc3P49135 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ercc3P49135 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ercc3P49135 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC21.1■□□□□ 0.97
Ercc3P49135 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ercc3P49135 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC21.1■□□□□ 0.97
Ercc3P49135 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
Ercc3P49135 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC21.1■□□□□ 0.97
Ercc3P49135 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC21.1■□□□□ 0.97
Ercc3P49135 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ercc3P49135 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ercc3P49135 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC21.1■□□□□ 0.97
Ercc3P49135 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Ercc3P49135 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ercc3P49135 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
Ercc3P49135 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ercc3P49135 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC21.1■□□□□ 0.97
Ercc3P49135 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ercc3P49135 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ercc3P49135 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Ercc3P49135 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ercc3P49135 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ercc3P49135 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC21.09■□□□□ 0.97
Ercc3P49135 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC21.09■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms