Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
RaraP11416 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RaraP11416 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
RaraP11416 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
RaraP11416 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RaraP11416 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RaraP11416 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
RaraP11416 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
RaraP11416 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RaraP11416 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RaraP11416 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RaraP11416 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
RaraP11416 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC19.32■□□□□ 0.68
RaraP11416 Gm26571-201ENSMUST00000181399 666 ntBASIC19.32■□□□□ 0.68
RaraP11416 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC19.32■□□□□ 0.68
RaraP11416 Gm6365-201ENSMUST00000054711 744 ntBASIC19.32■□□□□ 0.68
RaraP11416 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RaraP11416 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RaraP11416 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RaraP11416 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
RaraP11416 Gm15635-204ENSMUST00000208024 2539 ntBASIC19.31■□□□□ 0.68
RaraP11416 AC121598.2-201ENSMUST00000228376 2325 ntBASIC19.31■□□□□ 0.68
RaraP11416 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
RaraP11416 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RaraP11416 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RaraP11416 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
RaraP11416 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC19.31■□□□□ 0.68
RaraP11416 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RaraP11416 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RaraP11416 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
RaraP11416 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC19.31■□□□□ 0.68
RaraP11416 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC19.31■□□□□ 0.68
RaraP11416 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
RaraP11416 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RaraP11416 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RaraP11416 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RaraP11416 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
RaraP11416 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC19.31■□□□□ 0.68
RaraP11416 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC19.3■□□□□ 0.68
RaraP11416 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RaraP11416 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RaraP11416 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RaraP11416 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RaraP11416 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RaraP11416 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC19.3■□□□□ 0.68
RaraP11416 Gm7291-201ENSMUST00000199147 382 ntBASIC19.3■□□□□ 0.68
RaraP11416 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RaraP11416 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RaraP11416 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RaraP11416 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RaraP11416 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RaraP11416 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RaraP11416 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RaraP11416 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RaraP11416 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RaraP11416 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
RaraP11416 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
RaraP11416 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RaraP11416 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RaraP11416 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC19.29■□□□□ 0.68
RaraP11416 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RaraP11416 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RaraP11416 Gm37563-201ENSMUST00000192580 1513 ntBASIC19.29■□□□□ 0.68
RaraP11416 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC19.29■□□□□ 0.68
RaraP11416 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RaraP11416 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC19.29■□□□□ 0.68
RaraP11416 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RaraP11416 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RaraP11416 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RaraP11416 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RaraP11416 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC19.28■□□□□ 0.68
RaraP11416 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC19.28■□□□□ 0.68
RaraP11416 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RaraP11416 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RaraP11416 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RaraP11416 Gm43294-201ENSMUST00000202850 2490 ntBASIC19.28■□□□□ 0.68
RaraP11416 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
RaraP11416 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RaraP11416 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
RaraP11416 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RaraP11416 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC19.28■□□□□ 0.68
RaraP11416 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RaraP11416 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
RaraP11416 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RaraP11416 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RaraP11416 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RaraP11416 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
RaraP11416 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RaraP11416 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RaraP11416 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
RaraP11416 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RaraP11416 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.28■□□□□ 0.68
RaraP11416 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RaraP11416 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RaraP11416 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RaraP11416 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
RaraP11416 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
RaraP11416 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RaraP11416 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RaraP11416 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 46 ms