Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cops4O88544 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
Cops4O88544 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cops4O88544 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
Cops4O88544 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cops4O88544 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Cops4O88544 Tgds-204ENSMUST00000228543 1594 ntBASIC16.51■□□□□ 0.23
Cops4O88544 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cops4O88544 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cops4O88544 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cops4O88544 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Cops4O88544 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cops4O88544 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cops4O88544 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cops4O88544 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cops4O88544 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cops4O88544 CT030146.1-201ENSMUST00000220919 217 ntBASIC16.51■□□□□ 0.23
Cops4O88544 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cops4O88544 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cops4O88544 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cops4O88544 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cops4O88544 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Cops4O88544 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cops4O88544 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cops4O88544 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Cops4O88544 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cops4O88544 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Cops4O88544 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cops4O88544 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cops4O88544 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC16.5■□□□□ 0.23
Cops4O88544 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Cops4O88544 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cops4O88544 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
Cops4O88544 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cops4O88544 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Cops4O88544 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cops4O88544 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cops4O88544 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Cops4O88544 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Cops4O88544 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cops4O88544 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cops4O88544 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Cops4O88544 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cops4O88544 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cops4O88544 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cops4O88544 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cops4O88544 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC16.5■□□□□ 0.23
Cops4O88544 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
Cops4O88544 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC16.49■□□□□ 0.23
Cops4O88544 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cops4O88544 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Cops4O88544 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC16.49■□□□□ 0.23
Cops4O88544 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cops4O88544 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cops4O88544 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Cops4O88544 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cops4O88544 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cops4O88544 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Cops4O88544 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cops4O88544 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cops4O88544 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cops4O88544 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cops4O88544 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cops4O88544 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cops4O88544 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cops4O88544 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cops4O88544 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cops4O88544 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
Cops4O88544 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
Cops4O88544 Cdc34b-202ENSMUST00000188741 1252 ntBASIC16.48■□□□□ 0.23
Cops4O88544 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cops4O88544 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Cops4O88544 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cops4O88544 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cops4O88544 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cops4O88544 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cops4O88544 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Cops4O88544 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cops4O88544 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cops4O88544 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cops4O88544 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cops4O88544 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC16.47■□□□□ 0.23
Cops4O88544 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cops4O88544 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Cops4O88544 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC16.47■□□□□ 0.23
Cops4O88544 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC16.47■□□□□ 0.23
Cops4O88544 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC16.47■□□□□ 0.23
Cops4O88544 AC107452.1-201ENSMUST00000227963 481 ntBASIC16.47■□□□□ 0.23
Cops4O88544 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Cops4O88544 Gm43672-201ENSMUST00000199072 1731 ntBASIC16.47■□□□□ 0.23
Cops4O88544 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cops4O88544 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cops4O88544 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cops4O88544 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cops4O88544 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Cops4O88544 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Cops4O88544 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
Cops4O88544 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC16.46■□□□□ 0.23
Cops4O88544 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cops4O88544 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms