Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hmgb3O54879 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
Hmgb3O54879 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC14.86□□□□□ -0.03
Hmgb3O54879 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC14.86□□□□□ -0.03
Hmgb3O54879 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hmgb3O54879 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hmgb3O54879 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hmgb3O54879 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hmgb3O54879 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Hmgb3O54879 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Hmgb3O54879 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC14.86□□□□□ -0.03
Hmgb3O54879 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hmgb3O54879 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Hmgb3O54879 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hmgb3O54879 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC14.86□□□□□ -0.03
Hmgb3O54879 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hmgb3O54879 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hmgb3O54879 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hmgb3O54879 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Hmgb3O54879 Gm37194-201ENSMUST00000193092 3031 ntBASIC14.86□□□□□ -0.03
Hmgb3O54879 Gm15635-204ENSMUST00000208024 2539 ntBASIC14.86□□□□□ -0.03
Hmgb3O54879 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC14.85□□□□□ -0.03
Hmgb3O54879 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Hmgb3O54879 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Hmgb3O54879 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Hmgb3O54879 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Hmgb3O54879 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Hmgb3O54879 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Hmgb3O54879 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC14.85□□□□□ -0.03
Hmgb3O54879 Gm5522-201ENSMUST00000189483 1242 ntBASIC14.85□□□□□ -0.03
Hmgb3O54879 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Hmgb3O54879 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Hmgb3O54879 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Hmgb3O54879 Gm43548-201ENSMUST00000197139 2353 ntBASIC14.85□□□□□ -0.03
Hmgb3O54879 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Hmgb3O54879 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Hmgb3O54879 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Hmgb3O54879 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Hmgb3O54879 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC14.85□□□□□ -0.03
Hmgb3O54879 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Hmgb3O54879 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Hmgb3O54879 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Hmgb3O54879 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC14.84□□□□□ -0.03
Hmgb3O54879 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Hmgb3O54879 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Hmgb3O54879 Gm7292-201ENSMUST00000194706 2527 ntBASIC14.84□□□□□ -0.03
Hmgb3O54879 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC14.84□□□□□ -0.03
Hmgb3O54879 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Hmgb3O54879 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Hmgb3O54879 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Hmgb3O54879 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Hmgb3O54879 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Hmgb3O54879 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
Hmgb3O54879 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Hmgb3O54879 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC14.84□□□□□ -0.03
Hmgb3O54879 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Hmgb3O54879 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Hmgb3O54879 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Hmgb3O54879 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Hmgb3O54879 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Hmgb3O54879 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Hmgb3O54879 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Hmgb3O54879 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Hmgb3O54879 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Hmgb3O54879 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Hmgb3O54879 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC14.83□□□□□ -0.04
Hmgb3O54879 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Hmgb3O54879 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Hmgb3O54879 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Hmgb3O54879 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Hmgb3O54879 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Hmgb3O54879 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Hmgb3O54879 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Hmgb3O54879 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Hmgb3O54879 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Hmgb3O54879 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Hmgb3O54879 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Hmgb3O54879 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Hmgb3O54879 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Hmgb3O54879 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Hmgb3O54879 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC14.82□□□□□ -0.04
Hmgb3O54879 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Hmgb3O54879 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Hmgb3O54879 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Hmgb3O54879 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Hmgb3O54879 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Hmgb3O54879 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Hmgb3O54879 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Hmgb3O54879 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Hmgb3O54879 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Hmgb3O54879 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Hmgb3O54879 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Hmgb3O54879 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
Hmgb3O54879 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Hmgb3O54879 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Hmgb3O54879 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC14.81□□□□□ -0.04
Hmgb3O54879 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Hmgb3O54879 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Hmgb3O54879 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC14.81□□□□□ -0.04
Hmgb3O54879 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC14.81□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 26.4 ms