Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim54Q9ERP3 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim54Q9ERP3 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim54Q9ERP3 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trim54Q9ERP3 AC166341.7-201ENSMUST00000221698 126 ntBASIC19.41■□□□□ 0.7
Trim54Q9ERP3 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trim54Q9ERP3 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim54Q9ERP3 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trim54Q9ERP3 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim54Q9ERP3 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim54Q9ERP3 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Trim54Q9ERP3 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC19.4■□□□□ 0.7
Trim54Q9ERP3 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim54Q9ERP3 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim54Q9ERP3 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim54Q9ERP3 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim54Q9ERP3 Gm10654-201ENSMUST00000098653 1633 ntBASIC19.4■□□□□ 0.7
Trim54Q9ERP3 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim54Q9ERP3 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Trim54Q9ERP3 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim54Q9ERP3 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim54Q9ERP3 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC19.39■□□□□ 0.69
Trim54Q9ERP3 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim54Q9ERP3 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC19.39■□□□□ 0.69
Trim54Q9ERP3 Otx2os1-204ENSMUST00000227221 751 ntBASIC19.39■□□□□ 0.69
Trim54Q9ERP3 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Trim54Q9ERP3 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC19.39■□□□□ 0.69
Trim54Q9ERP3 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC19.39■□□□□ 0.69
Trim54Q9ERP3 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Trim54Q9ERP3 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim54Q9ERP3 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim54Q9ERP3 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.69
Trim54Q9ERP3 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim54Q9ERP3 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Trim54Q9ERP3 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Trim54Q9ERP3 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
Trim54Q9ERP3 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC19.38■□□□□ 0.69
Trim54Q9ERP3 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim54Q9ERP3 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim54Q9ERP3 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim54Q9ERP3 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim54Q9ERP3 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Trim54Q9ERP3 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim54Q9ERP3 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC19.37■□□□□ 0.69
Trim54Q9ERP3 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim54Q9ERP3 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trim54Q9ERP3 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim54Q9ERP3 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
Trim54Q9ERP3 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim54Q9ERP3 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trim54Q9ERP3 Timm23-208ENSMUST00000226683 750 ntBASIC19.37■□□□□ 0.69
Trim54Q9ERP3 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Trim54Q9ERP3 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim54Q9ERP3 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim54Q9ERP3 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim54Q9ERP3 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Trim54Q9ERP3 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim54Q9ERP3 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Trim54Q9ERP3 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim54Q9ERP3 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim54Q9ERP3 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
Trim54Q9ERP3 Gm10231-201ENSMUST00000181584 441 ntBASIC19.36■□□□□ 0.69
Trim54Q9ERP3 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim54Q9ERP3 Gm10175-202ENSMUST00000208752 441 ntBASIC19.36■□□□□ 0.69
Trim54Q9ERP3 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim54Q9ERP3 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim54Q9ERP3 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim54Q9ERP3 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Trim54Q9ERP3 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Trim54Q9ERP3 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Trim54Q9ERP3 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Trim54Q9ERP3 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim54Q9ERP3 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim54Q9ERP3 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim54Q9ERP3 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Trim54Q9ERP3 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim54Q9ERP3 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim54Q9ERP3 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim54Q9ERP3 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Trim54Q9ERP3 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC19.35■□□□□ 0.69
Trim54Q9ERP3 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC19.35■□□□□ 0.69
Trim54Q9ERP3 BC021767-201ENSMUST00000126387 1716 ntBASIC19.35■□□□□ 0.69
Trim54Q9ERP3 Gm38345-201ENSMUST00000192635 1748 ntBASIC19.35■□□□□ 0.69
Trim54Q9ERP3 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Trim54Q9ERP3 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim54Q9ERP3 Odf3b-204ENSMUST00000227834 930 ntBASIC19.35■□□□□ 0.69
Trim54Q9ERP3 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC19.35■□□□□ 0.69
Trim54Q9ERP3 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC19.35■□□□□ 0.69
Trim54Q9ERP3 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim54Q9ERP3 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim54Q9ERP3 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC19.34■□□□□ 0.69
Trim54Q9ERP3 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC19.34■□□□□ 0.69
Trim54Q9ERP3 Mir2861-201ENSMUST00000175539 82 ntBASIC19.34■□□□□ 0.69
Trim54Q9ERP3 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC19.34■□□□□ 0.69
Trim54Q9ERP3 Gm3375-201ENSMUST00000203929 796 ntBASIC19.34■□□□□ 0.69
Trim54Q9ERP3 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Trim54Q9ERP3 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim54Q9ERP3 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim54Q9ERP3 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim54Q9ERP3 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms