Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Brf1Q8CFK2 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Brf1Q8CFK2 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC21.67■■□□□ 1.06
Brf1Q8CFK2 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Brf1Q8CFK2 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC21.67■■□□□ 1.06
Brf1Q8CFK2 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Brf1Q8CFK2 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC21.67■■□□□ 1.06
Brf1Q8CFK2 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Brf1Q8CFK2 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Brf1Q8CFK2 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Brf1Q8CFK2 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Brf1Q8CFK2 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Brf1Q8CFK2 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Brf1Q8CFK2 Gm37856-201ENSMUST00000191634 999 ntBASIC21.66■■□□□ 1.06
Brf1Q8CFK2 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Brf1Q8CFK2 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Brf1Q8CFK2 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Brf1Q8CFK2 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Brf1Q8CFK2 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Brf1Q8CFK2 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
Brf1Q8CFK2 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
Brf1Q8CFK2 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Brf1Q8CFK2 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Brf1Q8CFK2 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Brf1Q8CFK2 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC21.65■■□□□ 1.06
Brf1Q8CFK2 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC21.65■■□□□ 1.06
Brf1Q8CFK2 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Brf1Q8CFK2 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Brf1Q8CFK2 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC21.65■■□□□ 1.06
Brf1Q8CFK2 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Brf1Q8CFK2 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Brf1Q8CFK2 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Brf1Q8CFK2 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
Brf1Q8CFK2 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Brf1Q8CFK2 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Brf1Q8CFK2 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Brf1Q8CFK2 Gm21596-201ENSMUST00000178049 1316 ntBASIC21.64■■□□□ 1.05
Brf1Q8CFK2 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Brf1Q8CFK2 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
Brf1Q8CFK2 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Brf1Q8CFK2 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
Brf1Q8CFK2 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Brf1Q8CFK2 Rarb-207ENSMUST00000225921 2756 ntBASIC21.64■■□□□ 1.05
Brf1Q8CFK2 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Brf1Q8CFK2 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Brf1Q8CFK2 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Brf1Q8CFK2 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Brf1Q8CFK2 Gm12669-201ENSMUST00000122162 1009 ntBASIC21.63■■□□□ 1.05
Brf1Q8CFK2 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Brf1Q8CFK2 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
Brf1Q8CFK2 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Brf1Q8CFK2 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC21.63■■□□□ 1.05
Brf1Q8CFK2 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Brf1Q8CFK2 Gm45141-201ENSMUST00000206502 1888 ntBASIC21.62■■□□□ 1.05
Brf1Q8CFK2 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC21.62■■□□□ 1.05
Brf1Q8CFK2 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Brf1Q8CFK2 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC21.62■■□□□ 1.05
Brf1Q8CFK2 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC21.62■■□□□ 1.05
Brf1Q8CFK2 AC163280.1-201ENSMUST00000228194 1100 ntBASIC21.62■■□□□ 1.05
Brf1Q8CFK2 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Brf1Q8CFK2 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Brf1Q8CFK2 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Brf1Q8CFK2 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
Brf1Q8CFK2 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Brf1Q8CFK2 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC21.61■■□□□ 1.05
Brf1Q8CFK2 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC21.61■■□□□ 1.05
Brf1Q8CFK2 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Brf1Q8CFK2 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Brf1Q8CFK2 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
Brf1Q8CFK2 Gm10653-202ENSMUST00000139570 835 ntBASIC21.61■■□□□ 1.05
Brf1Q8CFK2 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC21.61■■□□□ 1.05
Brf1Q8CFK2 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Brf1Q8CFK2 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Brf1Q8CFK2 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Brf1Q8CFK2 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Brf1Q8CFK2 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Brf1Q8CFK2 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
Brf1Q8CFK2 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Brf1Q8CFK2 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
Brf1Q8CFK2 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Brf1Q8CFK2 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Brf1Q8CFK2 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Brf1Q8CFK2 Trmt13-210ENSMUST00000198454 880 ntBASIC21.6■■□□□ 1.05
Brf1Q8CFK2 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Brf1Q8CFK2 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Brf1Q8CFK2 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Brf1Q8CFK2 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Brf1Q8CFK2 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Brf1Q8CFK2 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
Brf1Q8CFK2 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
Brf1Q8CFK2 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Brf1Q8CFK2 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Brf1Q8CFK2 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
Brf1Q8CFK2 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Brf1Q8CFK2 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
Brf1Q8CFK2 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
Brf1Q8CFK2 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Brf1Q8CFK2 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Brf1Q8CFK2 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
Brf1Q8CFK2 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms