Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
Usp40Q8BWR4 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
Usp40Q8BWR4 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
Usp40Q8BWR4 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC24.7■■□□□ 1.54
Usp40Q8BWR4 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC24.7■■□□□ 1.54
Usp40Q8BWR4 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC24.7■■□□□ 1.54
Usp40Q8BWR4 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Usp40Q8BWR4 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Usp40Q8BWR4 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
Usp40Q8BWR4 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
Usp40Q8BWR4 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC24.7■■□□□ 1.54
Usp40Q8BWR4 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC24.7■■□□□ 1.54
Usp40Q8BWR4 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC24.69■■□□□ 1.54
Usp40Q8BWR4 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
Usp40Q8BWR4 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
Usp40Q8BWR4 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
Usp40Q8BWR4 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC24.69■■□□□ 1.54
Usp40Q8BWR4 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC24.69■■□□□ 1.54
Usp40Q8BWR4 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Usp40Q8BWR4 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
Usp40Q8BWR4 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Usp40Q8BWR4 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Usp40Q8BWR4 Golph3-205ENSMUST00000228671 2842 ntBASIC24.68■■□□□ 1.54
Usp40Q8BWR4 Gm43213-201ENSMUST00000151866 1790 ntBASIC24.68■■□□□ 1.54
Usp40Q8BWR4 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Usp40Q8BWR4 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC24.68■■□□□ 1.54
Usp40Q8BWR4 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
Usp40Q8BWR4 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Usp40Q8BWR4 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Usp40Q8BWR4 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC24.68■■□□□ 1.54
Usp40Q8BWR4 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Usp40Q8BWR4 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC24.68■■□□□ 1.54
Usp40Q8BWR4 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC24.68■■□□□ 1.54
Usp40Q8BWR4 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Usp40Q8BWR4 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC24.68■■□□□ 1.54
Usp40Q8BWR4 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
Usp40Q8BWR4 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC24.68■■□□□ 1.54
Usp40Q8BWR4 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Usp40Q8BWR4 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Usp40Q8BWR4 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
Usp40Q8BWR4 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Usp40Q8BWR4 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.54
Usp40Q8BWR4 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC24.67■■□□□ 1.54
Usp40Q8BWR4 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
Usp40Q8BWR4 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Usp40Q8BWR4 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC24.67■■□□□ 1.54
Usp40Q8BWR4 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Usp40Q8BWR4 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Usp40Q8BWR4 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Usp40Q8BWR4 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC24.66■■□□□ 1.54
Usp40Q8BWR4 Gm38027-201ENSMUST00000192315 235 ntBASIC24.66■■□□□ 1.54
Usp40Q8BWR4 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Usp40Q8BWR4 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Usp40Q8BWR4 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC24.66■■□□□ 1.54
Usp40Q8BWR4 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Usp40Q8BWR4 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Usp40Q8BWR4 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Usp40Q8BWR4 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Usp40Q8BWR4 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
Usp40Q8BWR4 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Usp40Q8BWR4 Gm9694-201ENSMUST00000193347 1189 ntBASIC24.65■■□□□ 1.54
Usp40Q8BWR4 Gm4974-201ENSMUST00000209974 875 ntBASIC24.65■■□□□ 1.54
Usp40Q8BWR4 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC24.65■■□□□ 1.54
Usp40Q8BWR4 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Usp40Q8BWR4 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Usp40Q8BWR4 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Usp40Q8BWR4 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Usp40Q8BWR4 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC24.64■■□□□ 1.54
Usp40Q8BWR4 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC24.64■■□□□ 1.54
Usp40Q8BWR4 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
Usp40Q8BWR4 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC24.64■■□□□ 1.53
Usp40Q8BWR4 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC24.64■■□□□ 1.53
Usp40Q8BWR4 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC24.63■■□□□ 1.53
Usp40Q8BWR4 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
Usp40Q8BWR4 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Usp40Q8BWR4 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
Usp40Q8BWR4 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
Usp40Q8BWR4 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
Usp40Q8BWR4 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
Usp40Q8BWR4 Gm13401-201ENSMUST00000117074 291 ntBASIC24.63■■□□□ 1.53
Usp40Q8BWR4 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
Usp40Q8BWR4 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC24.63■■□□□ 1.53
Usp40Q8BWR4 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
Usp40Q8BWR4 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC24.63■■□□□ 1.53
Usp40Q8BWR4 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC24.63■■□□□ 1.53
Usp40Q8BWR4 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Usp40Q8BWR4 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
Usp40Q8BWR4 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
Usp40Q8BWR4 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC24.62■■□□□ 1.53
Usp40Q8BWR4 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC24.62■■□□□ 1.53
Usp40Q8BWR4 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Usp40Q8BWR4 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
Usp40Q8BWR4 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Usp40Q8BWR4 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
Usp40Q8BWR4 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Usp40Q8BWR4 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
Usp40Q8BWR4 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC24.61■■□□□ 1.53
Usp40Q8BWR4 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Usp40Q8BWR4 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Usp40Q8BWR4 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms