Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC15.01□□□□□ -0.01
Col7a1Q63870 Gm37820-201ENSMUST00000194021 2147 ntBASIC15.01□□□□□ -0.01
Col7a1Q63870 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col7a1Q63870 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col7a1Q63870 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
Col7a1Q63870 Gm42670-201ENSMUST00000201816 1292 ntBASIC15.01□□□□□ -0.01
Col7a1Q63870 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col7a1Q63870 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Col7a1Q63870 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col7a1Q63870 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col7a1Q63870 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col7a1Q63870 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col7a1Q63870 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Col7a1Q63870 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Col7a1Q63870 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC15□□□□□ -0.01
Col7a1Q63870 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col7a1Q63870 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col7a1Q63870 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC15□□□□□ -0.01
Col7a1Q63870 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
Col7a1Q63870 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col7a1Q63870 Gm10576-201ENSMUST00000191927 825 ntBASIC15□□□□□ -0.01
Col7a1Q63870 Gm2756-201ENSMUST00000195851 400 ntBASIC15□□□□□ -0.01
Col7a1Q63870 AC138767.1-201ENSMUST00000222661 415 ntBASIC15□□□□□ -0.01
Col7a1Q63870 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC15□□□□□ -0.01
Col7a1Q63870 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col7a1Q63870 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col7a1Q63870 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col7a1Q63870 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col7a1Q63870 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC15□□□□□ -0.01
Col7a1Q63870 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC15□□□□□ -0.01
Col7a1Q63870 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col7a1Q63870 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col7a1Q63870 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC15□□□□□ -0.01
Col7a1Q63870 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Col7a1Q63870 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Col7a1Q63870 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col7a1Q63870 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col7a1Q63870 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
Col7a1Q63870 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col7a1Q63870 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC14.99□□□□□ -0.01
Col7a1Q63870 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC14.99□□□□□ -0.01
Col7a1Q63870 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC14.99□□□□□ -0.01
Col7a1Q63870 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC14.99□□□□□ -0.01
Col7a1Q63870 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC14.99□□□□□ -0.01
Col7a1Q63870 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Col7a1Q63870 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col7a1Q63870 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col7a1Q63870 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col7a1Q63870 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Col7a1Q63870 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Col7a1Q63870 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC14.99□□□□□ -0.01
Col7a1Q63870 Gm7638-201ENSMUST00000121348 967 ntBASIC14.99□□□□□ -0.01
Col7a1Q63870 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC14.99□□□□□ -0.01
Col7a1Q63870 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Col7a1Q63870 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Col7a1Q63870 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col7a1Q63870 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
Col7a1Q63870 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Col7a1Q63870 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
Col7a1Q63870 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col7a1Q63870 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col7a1Q63870 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
Col7a1Q63870 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col7a1Q63870 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col7a1Q63870 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC14.98□□□□□ -0.01
Col7a1Q63870 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Col7a1Q63870 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col7a1Q63870 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC14.97□□□□□ -0.01
Col7a1Q63870 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col7a1Q63870 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
Col7a1Q63870 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col7a1Q63870 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col7a1Q63870 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col7a1Q63870 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Col7a1Q63870 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col7a1Q63870 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Col7a1Q63870 Gm13127-201ENSMUST00000118978 1389 ntBASIC14.97□□□□□ -0.01
Col7a1Q63870 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col7a1Q63870 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col7a1Q63870 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Col7a1Q63870 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col7a1Q63870 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC14.96□□□□□ -0.01
Col7a1Q63870 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
Col7a1Q63870 Actl10-202ENSMUST00000226583 1501 ntBASIC14.96□□□□□ -0.01
Col7a1Q63870 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col7a1Q63870 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC14.96□□□□□ -0.01
Col7a1Q63870 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC14.96□□□□□ -0.01
Col7a1Q63870 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
Col7a1Q63870 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col7a1Q63870 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col7a1Q63870 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC14.96□□□□□ -0.01
Col7a1Q63870 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Col7a1Q63870 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Col7a1Q63870 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
Col7a1Q63870 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Col7a1Q63870 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
Col7a1Q63870 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Col7a1Q63870 Gm4995-201ENSMUST00000117247 432 ntBASIC14.96□□□□□ -0.02
Col7a1Q63870 Gm11779-201ENSMUST00000118541 368 ntBASIC14.96□□□□□ -0.02
Col7a1Q63870 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms