Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Gm5112-201ENSMUST00000204407 2368 ntBASIC20.69■□□□□ 0.9
Ccdc88aQ5SNZ0 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC20.69■□□□□ 0.9
Ccdc88aQ5SNZ0 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc88aQ5SNZ0 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc88aQ5SNZ0 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc88aQ5SNZ0 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC20.69■□□□□ 0.9
Ccdc88aQ5SNZ0 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Ccdc88aQ5SNZ0 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Ccdc88aQ5SNZ0 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc88aQ5SNZ0 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc88aQ5SNZ0 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc88aQ5SNZ0 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc88aQ5SNZ0 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc88aQ5SNZ0 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc88aQ5SNZ0 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc88aQ5SNZ0 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc88aQ5SNZ0 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc88aQ5SNZ0 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Ccdc88aQ5SNZ0 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc88aQ5SNZ0 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC20.68■□□□□ 0.9
Ccdc88aQ5SNZ0 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC20.68■□□□□ 0.9
Ccdc88aQ5SNZ0 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc88aQ5SNZ0 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc88aQ5SNZ0 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc88aQ5SNZ0 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc88aQ5SNZ0 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc88aQ5SNZ0 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc88aQ5SNZ0 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc88aQ5SNZ0 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc88aQ5SNZ0 Gm35558-201ENSMUST00000222675 2219 ntBASIC20.67■□□□□ 0.9
Ccdc88aQ5SNZ0 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc88aQ5SNZ0 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Ccdc88aQ5SNZ0 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc88aQ5SNZ0 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC20.67■□□□□ 0.9
Ccdc88aQ5SNZ0 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc88aQ5SNZ0 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc88aQ5SNZ0 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC20.67■□□□□ 0.9
Ccdc88aQ5SNZ0 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
Ccdc88aQ5SNZ0 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc88aQ5SNZ0 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
Ccdc88aQ5SNZ0 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
Ccdc88aQ5SNZ0 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc88aQ5SNZ0 Gm37292-201ENSMUST00000192062 758 ntBASIC20.66■□□□□ 0.9
Ccdc88aQ5SNZ0 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc88aQ5SNZ0 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc88aQ5SNZ0 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Ccdc88aQ5SNZ0 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc88aQ5SNZ0 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc88aQ5SNZ0 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc88aQ5SNZ0 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC20.66■□□□□ 0.9
Ccdc88aQ5SNZ0 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
Ccdc88aQ5SNZ0 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc88aQ5SNZ0 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc88aQ5SNZ0 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc88aQ5SNZ0 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc88aQ5SNZ0 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc88aQ5SNZ0 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc88aQ5SNZ0 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc88aQ5SNZ0 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC20.65■□□□□ 0.9
Ccdc88aQ5SNZ0 Gm7712-202ENSMUST00000222331 1510 ntBASIC20.65■□□□□ 0.9
Ccdc88aQ5SNZ0 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc88aQ5SNZ0 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc88aQ5SNZ0 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC20.65■□□□□ 0.9
Ccdc88aQ5SNZ0 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
Ccdc88aQ5SNZ0 Gm37820-201ENSMUST00000194021 2147 ntBASIC20.64■□□□□ 0.9
Ccdc88aQ5SNZ0 Gm42545-201ENSMUST00000202755 922 ntBASIC20.64■□□□□ 0.9
Ccdc88aQ5SNZ0 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC20.64■□□□□ 0.9
Ccdc88aQ5SNZ0 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Ccdc88aQ5SNZ0 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
Ccdc88aQ5SNZ0 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Ccdc88aQ5SNZ0 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc88aQ5SNZ0 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc88aQ5SNZ0 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc88aQ5SNZ0 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc88aQ5SNZ0 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC20.64■□□□□ 0.89
Ccdc88aQ5SNZ0 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc88aQ5SNZ0 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc88aQ5SNZ0 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc88aQ5SNZ0 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc88aQ5SNZ0 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
Ccdc88aQ5SNZ0 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc88aQ5SNZ0 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC20.63■□□□□ 0.89
Ccdc88aQ5SNZ0 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC20.63■□□□□ 0.89
Ccdc88aQ5SNZ0 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Ccdc88aQ5SNZ0 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC20.63■□□□□ 0.89
Ccdc88aQ5SNZ0 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc88aQ5SNZ0 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC20.63■□□□□ 0.89
Ccdc88aQ5SNZ0 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc88aQ5SNZ0 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC20.62■□□□□ 0.89
Ccdc88aQ5SNZ0 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Ccdc88aQ5SNZ0 AC159205.3-201ENSMUST00000224614 874 ntBASIC20.62■□□□□ 0.89
Ccdc88aQ5SNZ0 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Ccdc88aQ5SNZ0 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ccdc88aQ5SNZ0 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ccdc88aQ5SNZ0 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ccdc88aQ5SNZ0 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ccdc88aQ5SNZ0 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ccdc88aQ5SNZ0 Fst-202ENSMUST00000223640 2612 ntBASIC20.62■□□□□ 0.89
Ccdc88aQ5SNZ0 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Ccdc88aQ5SNZ0 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms